Protein Model on 7dcx_H_1_D_1 (TEMPLATE: 7dcx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) H 1 (K) polymer(polypeptide(L)) [1061 aa] Spike glycoprotein :SPIKE_SARS2
2 b D 1 (E) polymer(polypeptide(L)) [221 aa] The heavy chain of 3C1 fab that binds with the up RBD 372A 373S 374F 375S 376T 405D 407V 408R 414Q 415T 416G 417K 420D 421Y 455L 456F 457R 459S 460N 473Y 504G 505Y (identity: 100.0 %/93.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dcx_H_1 identity=93.4%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7dcx_H_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :               EEESEEEEE SSS    S EEEEEEEE  SSEEE  EEB  -------  B    EESTT EEEEEEESSS    EEEESSSSSS:    
ExpBur          :eeeebeeeeeeeeeebebebbbbbbbeeeeeeeeeeeeeeebbbbeeebeebbbbe-------ebbbbeebebeebbbbbbbbebebbbbbbbbbebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dcx_H_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE   EEEEEEEE    SSS TT   EEEEES      EEEE            SSB EEEEEEEEEETTEEEEEEEEE   BS:    
ExpBur          :eebbbbbbebebebbebbebebbebbbbbbbebeeeeeeeeeeeebeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeebebebbeeeeebeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dcx_H_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS  SSEEEEEEEEEEE      EEEE B     -------  S    SEEEEEE  EEEEEEEEE SS  EEEEEESSS HHHHHHHHHT S   SEEE:    
ExpBur          :eebeeeebbbeeeeebebebebeebbbbbbbbee-------eeeebbbbbbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dcx_H_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEEE     EE     S  B  THHHHS S  B SSS   EEE SSB   HHHHTT   SEEEESSS TTTGGG  BSEEEEEEEEE STTTTTSSTT:    
ExpBur          :ebeebebeeeeebeeeeeeeeebeeeebbebeebebbbebeeeeeeebebebbebeeeeeeeebebeebebeebeeeebbbbbbbbbbbbbebbebbbee:    
Contact         :                                                          bbbbb                            b bb     

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dcx_H_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  STTTTTT B  SS  SEEEEEE TTTS  TT     EEE   SS   BT        EE SSS  TTS BTTEE SEEE    TTS GGGS EEEEEE:    
ExpBur          :eebebbeebbebbeebebbbbbbebeeebeeeeebeebebbeebeeebeeeeebeeeebeeeeeeebeeeeeeebeebeeebeeeeeeeeeebbbbbbbb:    
Contact         :bbbb  bb                                 bbb bb            b                              bb        

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dcx_H_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  SS   B   TT      SS EEEE SS EEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEEE  EEEEEEEE  TTT     EEEE:    
ExpBur          :bbeeeeeeeebebeeeebebeeeebbebebeeeeeebbbeeeeeebeeeeeeeeeeeeebebbebeeeeeebbbeebeebbbbbbbbeeeebeeebbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dcx_H_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :TS SS  -------------------- EEE SSEEEES EE SS B  SEEEETTEEEEEE ------------  EEEEEEB           TT EE:    
ExpBur          :ebebeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :************************************************************************************************** *:
7dcx_H_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813
SecStr          :EEEEEE  EEEEEEE     EEE HHHHHSTT SHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHT  SSS     S   BTTB  TTTS  TT - :    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbbeeee-e:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dcx_H_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :   HHHHHHHSS  --------------------------  SSEEE   SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :ebbebbeebbeeee--------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebbe:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dcx_H_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHHTT  TTSS S SHHHHSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebeebbeebeeeeeeeeebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dcx_H_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTSS    TTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEE   S EESSSEEEEESSSEEEESSSSEEEE SSS   B:    
ExpBur          :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbbeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dcx_H_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :   TTTEEEEEESSSSTT        THHHHHH :    
ExpBur          :ebbeeebeeeeebeeeeeeeebebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123