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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | H 1 (K) | polymer(polypeptide(L)) [1061 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | D 1 (E) | polymer(polypeptide(L)) [221 aa] | The heavy chain of 3C1 fab that binds with the up RBD | 372A 373S 374F 375S 376T 405D 407V 408R 414Q 415T 416G 417K 420D 421Y 455L 456F 457R 459S 460N 473Y 504G 505Y (identity: 100.0 %/93.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dcx_H_1 identity=93.4% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7dcx_H_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEESEEEEE SSS S EEEEEEEE SSEEE EEB ------- B EESTT EEEEEEESSS EEEESSSSSS: ExpBur :eeeebeeeeeeeeeebebebbbbbbbeeeeeeeeeeeeeeebbbbeeebeebbbbe-------ebbbbeebebeebbbbbbbbebebbbbbbbbbebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7dcx_H_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE EEEEEEEE SSS TT EEEEES EEEE SSB EEEEEEEEEETTEEEEEEEEE BS: ExpBur :eebbbbbbebebebbebbebebbebbbbbbbebeeeeeeeeeeeebeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeebebebbeeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7dcx_H_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS SSEEEEEEEEEEE EEEE B ------- S SEEEEEE EEEEEEEEE SS EEEEEESSS HHHHHHHHHT S SEEE: ExpBur :eebeeeebbbeeeeebebebebeebbbbbbbbee-------eeeebbbbbbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7dcx_H_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE EE S B THHHHS S B SSS EEE SSB HHHHTT SEEEESSS TTTGGG BSEEEEEEEEE STTTTTSSTT: ExpBur :ebeebebeeeeebeeeeeeeeebeeeebbebeebebbbebeeeeeeebebebbebeeeeeeeebebeebebeebeeeebbbbbbbbbbbbbebbebbbee: Contact : bbbbb b bb queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7dcx_H_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : STTTTTT B SS SEEEEEE TTTS TT EEE SS BT EE SSS TTS BTTEE SEEE TTS GGGS EEEEEE: ExpBur :eebebbeebbebbeebebbbbbbebeeebeeeeebeebebbeebeeebeeeeebeeeebeeeeeeebeeeeeeebeebeeebeeeeeeeeeebbbbbbbb: Contact :bbbb bb bbb bb b bb queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7dcx_H_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEE SS B TT SS EEEE SS EEEEEEEE TT EEE TTS EEEEE SSS EEEEEE EEEEEEEE TTT EEEE: ExpBur :bbeeeeeeeebebeeeebebeeeebbebebeeeeeebbbeeeeeebeeeeeeeeeeeeebebbebeeeeeebbbeebeebbbbbbbbeeeebeeebbbee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7dcx_H_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :TS SS -------------------- EEE SSEEEES EE SS B SEEEETTEEEEEE ------------ EEEEEEB TT EE: ExpBur :ebebeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :************************************************************************************************** *: 7dcx_H_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813 SecStr :EEEEEE EEEEEEE EEE HHHHHSTT SHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHT SSS S BTTB TTTS TT - : ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbbeeee-e: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ************************************************************: 7dcx_H_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHSS -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHTTT T: ExpBur :ebbebbeebbeeee--------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebbe: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7dcx_H_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHHTT TTSS S SHHHHSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebeebbeebeeeeeeeeebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7dcx_H_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTSS TTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEE S EESSSEEEEESSSEEEESSSSEEEE SSS B: ExpBur :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7dcx_H_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : TTTEEEEEESSSSTT THHHHHH : ExpBur :ebbeeebeeeeebeeeeeeeebebeeeeeeeeee: |