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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1071 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | G 1 (L) | polymer(polypeptide(L)) [108 aa] | P17 light chain | 375S 376T 377F 408R 503V 508Y (identity: 100.0 %/94.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cwm_B_1 identity=94.4% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :****************************************************************************************************: 7cwm_B_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : S EEEESS EE S S EEEEEEEE SSEEEEEEEEEEE SSS EEE EE S EEEEE SS EEEE BSSSSSS: ExpBur :eeeeeeeeeeeeeeebebebbbbbebeeeeeeeeeeeeeebbbbbeeebbbbbbbeeeeeeeeeebebeebebeebbbbbbebeeebbbbbbbbeebbee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7cwm_B_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEE SS B EEEEEEE SS EEEEE SSTT EEEESTTTEEEEEEEEEE BS SS SSSS TTEEEEEEEEETTEEEEEEEEE SS: ExpBur :bebbbbbbeeeebbbebbebebbebbbbbbeeeeeeeeeebbeeebbeeeeeeeeeeeeeebbeeeeeeebeeebbbbbbbbbeeeebbbbbeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :************************************** **********************************************************: 7cwm_B_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPXXXXSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EEEEEEEEE EE EEEEE S ---- S EEEEEEE EEEEEEEE TTS EEESTTSTTTTTTTTS SS SEEE: ExpBur :eebeeeebbbeeebebebebebeebbbbbbbeeeeeee----eeebeeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :**************** ********************************************************************************: 7cwm_B_1 314:QTSNFRVQPTESIVRFXXXXNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE EEEE ---- HHHHTT S STT EEEEE SB HHHHHHH SEEE SS TTGGGTS BS EEEEEEEE TTGGGT STT: ExpBur :ebeebebeeeeebebe----eebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeeeeeeebeeeebbbbebbbbbbebebbeebbee: Contact : bbb b queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7cwm_B_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT SS EEEE B TTTSS TT B EEE SS TT EESSSS TTS SSEE SEEE B TTS GGG EEEEEE: ExpBur :eeeebbbbbbbbbeebebbbbbbebbeebbeeebbeebebbeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebebbeeeeeeebbbbbbbb: Contact : b b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :************** ***********************************************************************************: 7cwm_B_1 514:SFELLHAPATVCGPXXXTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E SS B --- SSEEEEEETTEEEEEEEEE TT B TTS EEE SSS EEEEE EEEEEEEES TTT S EEEEE: ExpBur :bbbeeeeeeebebe---eebbeeebbebbbeebeeebebeebeeebeeeeeebeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbbeebeeebbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7cwm_B_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T SS -------------------- EEE SSEEEES EE SS B SEEEETTEEE S ------------ EEEE B S TTEEE: ExpBur :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7cwm_B_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EE EEEEEEEEEEE EEE HHHHHS S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS SSS TTTS TTSSS: ExpBur :bbbebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeebebeeeeebeebebeebbeeeeeee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ******************************************************************: 7cwm_B_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHH -------------------- TTTHHHHTTEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHHHHT T: ExpBur :eebebbbbbbeebe--------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7cwm_B_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebbebbeebeeebeeeeebeeeebeebbeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7cwm_B_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTTS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSSSEEEESSSEEEESSSSEEEE SSS E: ExpBur :bbeebeebbeebbebbeebbbeebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebebbbeeeebbbbbebbbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7cwm_B_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr :E BGGGEEEES TTTSTT EE B SHHHHH : ExpBur :ebbeeebeeeeebeeeeebeeeebeeeeeeeeee: |