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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1037 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | F 1 (k) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 165N (identity: 100.0 %/92.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cn9_C_1 identity=92.8% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :****************************************************************************************************: 7cn9_C_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE SS SSS SS EEEEEEE TT EEE S SS S SSSS TT B TT EEEEE SS S EEEESS SSSS EEEE SSSE: ExpBur :eeeebebbbbbbeeeeebeeeeeebeeebbbeeeebebbeeeeebeeeeeeeebeeebebeebbbbbbbebeeeebbbbbbeeeeeeebbbbeeeeeeeb: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :********************************* ************ ****************************************: 7cn9_C_1 114:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVXXXXXNCTFEYVSQPFLXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE S SSS SS ----- B ---------- EEEEEEEETTS EEEEEEEE S SSS S B : ExpBur :bbbbbeeeebebebeeeebeeeeeeeeebeeee-----eeeeeeeeeeee----------eebbbebbbeeeeebebbbeebeeeeeeebeeeebebeee: Contact : b queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :****************************************************************************************************: 7cn9_C_1 214:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr : S EEEE SSSSSSS S EEEEEEE TT EETTS HHHHHHHHHT SS SEEEEEEEE E: ExpBur :eeeeeeeebebbbbeebeeeeebeeeeeeeeeeeeeebbbbeebeeeebbbebeeebebeeeebeeebbebebbbeeeeeebeebeeebeebeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 7cn9_C_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr :EE S HHHHHT S SSS EEEEE S HHHHHSTTSTT EE SS TTGGGT EES EEEEEEEE SSTTTT BTTB HHHHHTS : ExpBur :ebbeeeeeebebeeeeeeeebbbbbebeeeebeebbbebeeebeeeebeeeeeeeeeeeebbeebbbebebbbbbbeeebbeebbeebeeebbeebbbeb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :*********************************************** ****************************************: 7cn9_C_1 414:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYXXXXXXXXXXXXXNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SSS EEEEEE TT SSTTS EES SS SSS ------------- SEE S SSSS EEEEEEE SSSS EE : ExpBur :eeebbbbbbeebeeeeeeeeeeeebeeebeeeebeeeeeeeeeebee-------------eeeebbbeeebbbeeeeeebbebbbbeebeeeeeeeebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 7cn9_C_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 613 SecStr : SS EEETTB EEEE S SS S SSTT EEE TTT EEEEE EEEEEEE TTT EEE TT S ------: ExpBur :ebeeeeeeeeebbebbbbebeeebbbeeeeeeeeeeebeeeeeeeeeebbbbbeeeebbbbeebeebbbbbbbbbeeeeeebbbbbeeeeeeee------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : *************************************** *****************************************: 7cn9_C_1 614:XXXXXXXRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAXXXXXXXXXXXXGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :------- SSSS EETTEE TTSEE B SS STTEE ------------ SS S EEEEB S TT B EEEEEEEEEE: ExpBur :-------eeeeeebeeeebebbbbbebeeeeeeeebebebeeeebb------------eeeeeeebebbeeeeeeeeeeeeeeeebebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 7cn9_C_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :E B HHHHHHTT HHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH SSS S TT GGGTS S SSSS HHHHHHHHH : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbebbbeebeeeeebeeeeebeebebeebbbeeeeeebbbebbeebeeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** **************************************************************************: 7cn9_C_1 814:TLXXXXXXXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : ------------------------ SS B SS HHHHHHHHHHHHHHHHHTTTHHHHSS HHHHHHHHHHHHTS THHHHHHHHHHHHH: ExpBur :ee------------------------eeeebeeeeeeebeeeeebebbbbbbbbbbebbeebeebeeeeeebeebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 7cn9_C_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHSS TTHHHHHHHHHHHHHHHHHHHHTT TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbbebbeeeeeeeeebeebbebbeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbeebbeebbeebeeebeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 7cn9_C_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHHTS TTTSSSSEEEEEEE BTTBEEEEEEEEEEE B B S EEETTEEEE SSSEEEBSSSS EEE TTS B BSSSSEEEEES: ExpBur :ebbbebbbbbeeeeebbeebebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebebbbeeeebbbbeebbbeeeebeeebbeeeeeb: queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 7cn9_C_1 1114:DVVIGIVNNTVYDP:1127 SecStr :SSSSS B B : ExpBur :eeeeeeeebebeee: |