Protein Model on 7cn9_A_1_P_1 (TEMPLATE: 7cn9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1011 aa] Spike glycoprotein :SPIKE_SARS2
2 b P 1 (V) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 331N 332I 580Q 581T 582L (identity: 100.0 %/90.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cn9_A_1 identity=90.6%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :****************************************************************************************************:
7cn9_A_1      14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113
SecStr          : EEE  S   B SSS    SSEEEEEEEE  SS EEE     S   SSS        B   SSEEEEEEESS S   EEEESS SSSS  EEEEE SS E:    
ExpBur          :eebebebbbbbbeeeeeeeeeeeeeeeebbbeeeebeeeebeeeebeeeeeeeeeeeeeeeebbbbbbeeeeeebebbbbbeebeeeebbbbbeeeeeeb:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************************************************   ********************************************:
7cn9_A_1     114:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLXXXQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213
SecStr          :EEE S     S    S  SSSS  SS      S   SSS   EEE S SSS  ---  SSEEEEE  BEESSSBEE EE EEEES  SS       BEE :    
ExpBur          :bbebbbeeebeebbeeebeeeeebeeebeeeeebeeeeeeeeeeeeeebeeeb---eeeebbbbbbbbbeeebebbbbbbebebeeeeebeeeeebbebe:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :****************************************************************************************************:
7cn9_A_1     214:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313
SecStr          :   B  S   EE         SSSS     SSS  S   EEEE EEEEEEEEE TTS EEEEEESSSSHHHHHHHHTTSS   SEEEEEE       S  :    
ExpBur          :eeeebeeebeebeeeeeebbeeeeeeeeebeeeeeeeeebbbebeeeebbbebeeebebeeebbbeeeebbbbbbeeeeeebeebeeebeeeebeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
7cn9_A_1     314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413
SecStr          :B  SSS    S HHHHT S    TTT   B   SS      TT  SSSS S  SS   SSTTT B   B B   S  STTGGG  TT SSSHHHHT    :    
ExpBur          :ebbeeeeeebeeeeeeeeeeebbeeeeeeeeebeeebbbeeeeeeeeeeeeeeeeeeeeebebeebbbbebebeebbeeeeeeeeeebeeebbbeeeeee:    
Contact         :    bb                                                                                              

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :*****************          *****                                ************************************:
7cn9_A_1     414:DDFTGCVIAWNSNNLDSXXXXXXXXXXRLFRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513
SecStr          :        B   STT  ----------     --------------------------------         SSSSSS    B    B SSSS  SSB :    
ExpBur          :eeeebbebbbebeeeee----------eeeee--------------------------------eeeeeeebeeeeeeebbebbbebbebeeeeeeeeeb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :***********************************************************************************************     :
7cn9_A_1     514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPXXXXX: 613
SecStr          :         SS   EE SSSEE SEEE       TT S  EETTTEE EE  TTTT  EEEE      EEEEES TTT    EEEE S   S   -----:    
ExpBur          :bbeeeeeeeeebbebebeebebebebeebeeebeeeeeebeeeeeeebbbbbbeeeebbbbeebeeeebbbbbbbbeebeeebbbeeebeeeeee-----:    
Contact         :                                                     bbb                                            

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :             *********************************             *****************************************:
7cn9_A_1     614:XXXXXXXXXXXXXSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAXXXXXXXXXXXXXSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------   B  TT  EES     S    SSB SSS B -------------   SSS   B             TTEEE   EE  B  EEE:    
ExpBur          :-------------eeebebebbbbeebeeeeeeeeeebebeeebbe-------------eeeeeebbbbeebeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :*************************************************************************************   ************:
7cn9_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXXXRSFIEDLLFNKV: 813
SecStr          :EE      EE HHHHHSSS HHHHHHHTTS THHHHHHHHHHHHHHHHHHHHHHHHTTSSS     S    TT   TTTS  TT ---  HHHHHHHTTS:    
ExpBur          :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeeeeeeebeebbeeeee---ebebbebbeeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**                        **************************************************************************:
7cn9_A_1     814:TLXXXXXXXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          :  ------------------------   SSEE    SS HHHHHHHHHHHHHHHHHT THHHHSS     HHHHHHHHHHHHT  HHHHHHHHHHHHHH:    
ExpBur          :ee------------------------eeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeebeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
7cn9_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHTT  SS SSS HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeebbeebbeeeeebeebeeebeeeeeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
7cn9_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHHSS    TTTSSSSEEEEEEE   SSEEEEEEEEE EE   EEE  S B SSSEEEEESSSEEEE SS EEEE SSS      BTTTEEEEEES:    
ExpBur          :ebbeebbbbbbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebeebbbeeeebbeeeeeebbbeeeebebbbebeebeeebbeebbeeeeeb:    

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
7cn9_A_1    1114:DVVIGIVNNTVYDP:1127
SecStr          :SS SS B    B  :    
ExpBur          :eeeeeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123