Protein Model on 7cai_A_1_E_1 (TEMPLATE: 7cai )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1023 aa] Spike glycoprotein :SPIKE_SARS2
2 b E 1 (E) polymer(polypeptide(L)) [214 aa] Heavy chain of H014 Fab 369Y 375S 376T 377F 378K 379C 380Y 382V 383S 384P 385T 405D 407V 408R 411A 412P 414Q (identity: 100.0 %/90.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cai_A_1 identity=90.9%
queryA        25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124
                :*********************************************          *********************************************:
7cai_A_1      25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124
SecStr          :     B TT  EE SSS    S EEEEE  B  SS B        ----------    EE  SEEEEEE  SS    EEEEES SSSSS   EEEEETT:    
ExpBur          :eeeeeebebbbbbbbeeeeeeeeeeebebbbbbbeeebebbebee----------ebeebebeebbbbbbbbeebbbebbbbbeebeeebebbbbbbeee:    

queryA       125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224
                :************************************************             ***************************************:
7cai_A_1     125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224
SecStr          :EEEEE   EEE SS   B  SS SSSS  TT   SEEEE   S B   -------------  EEEEEEEEEETTEEEEEE  EE   SSS  S   EEE:    
ExpBur          :eebbbbbbbebeeebbbbbeeebeeebeeeebeebeeeeeeeeeeeee-------------eeebbbbbbbbeeeebbbbbeeeebeeeebbbeeeebbe:    

queryA       225:PLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324
                :*********************                 **************************************************************:
7cai_A_1     225:PLVDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324
SecStr          :EEEEE       EEEEE  B -----------------        B  EEEEE  TTS   EEEESTTSHHHHHHHHHT S   SEE    B      S:    
ExpBur          :eeeebebebebeebbbbbbee-----------------ebbbbbbbeeeebbbebbeebebeebbbbeeeebbebbbeeebbebeeeebeeeebebeeee:    

queryA       325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424
                :****************************************************************************************************:
7cai_A_1     325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424
SecStr          :  EE   SS    SHHHHT SS B SSS EEEEE SS B TTTTSSSS  SEEEESSS HHHHTT   SSEEEEEEEEEGGGGTTSSSS  SSHHHHT  :    
ExpBur          :ebebbeeeeeebebeebbeeeebebbebbeeeebeebbbbbeebeeeeebeeeebeeeeeeebeebebbebbbbbbbbebebbebbbeeeeeebbeebbb:    
Contact         :                                            b     bbbbbb bbbb                   b bb  bb b          

queryA       425:LPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524
                :********************  ******************************************************************************:
7cai_A_1     425:LPDDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524
SecStr          :  SS  EEEEEEE TTTT  -- B S EEE   SS   TT        EE SSS  TTS BTTEE SEEE  B TTS TTTSEEEEEEEEE  SSS SS :    
ExpBur          :bbeebebbbbbbebeeebbe--ebeebbbbeeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeeeeb:    

queryA       525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI: 624
                :************************************************************************************************    :
7cai_A_1     525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXX: 624
SecStr          :  B        SEEEEEEETTEEEEEEE        TT   B  TTS   EEE TTS  EEE       BEEEEE  TTT S  EEEEET  SS  ----:    
ExpBur          :ebbeebeebeeeebbebebeebeeebbbbeeeeebeeeeeebeeeeeeeebbbbbeeeebbebeebbebbbbbbbbbbeebeebbbbeeebeeeee----:    

queryA       625:HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724
                :                ************************************            ************************************:
7cai_A_1     625:XXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724
SecStr          :---------------- EEE SSEEEES EE S     SEEEETTEEEE   ------------    EEEE   S       BTTEEEEES EEEEEEE:    
ExpBur          :----------------eebebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbbebebebee:    

queryA       725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824
                :****************************************************************************************************:
7cai_A_1     725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824
SecStr          :EEEE         TTTTTS S HHHHHHHHHHGGGTHHHHHHHHHHHTTHHHHHHHHH   SS     SS  SSS   TTTS  SSSSS   HHHHHHHH:    
ExpBur          :ebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeeeeeeebebbbbbbe:    

queryA       825:KVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924
                :***                          ***********************************************************************:
7cai_A_1     825:KVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924
SecStr          :H  --------------------------  SS      SS HHHHHHHHHHHHHHHHHHTTTTTSSS     HHHHHHHHHTTTT  THHHHHHHHHHH:    
ExpBur          :ebe--------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebb:    

queryA       925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024
                :*************************************************************  *************************************:
7cai_A_1     925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024
SecStr          :HHHHHHHHHHHHHHHH SSSSHHHHHHHHHHHHHHHHHHHGGG  TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebeebbeebbeebeeeeeebeebeebbeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbee:    

queryA      1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124
                :****************************************************************************************************:
7cai_A_1    1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124
SecStr          :HHHHHHHTTTS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEE  S EESSSSEEEESSS EEESSSSEEE  SSS    B BTTTEEE S:    
ExpBur          :bbebbeebbbebbeeeebbbeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbbbeeebbeebbeeee:    

queryA      1125:NCDVVIGIVNNTVYDPLQPELDS:1147
                :***********************:
7cai_A_1    1125:NCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          : TTTSSS EE   B SHHHHH  :    
ExpBur          :ebeeeeeeeeeebeeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123