Protein Model on 7cab_A_1_B_1 (TEMPLATE: 7cab )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1029 aa] Spike glycoprotein :SPIKE_SARS2
2 b B 1 (B) polymer(polypeptide(L)) [1029 aa] Spike glycoprotein :SPIKE_SARS2 52Q 314Q 316S 317N 319R 355R 381G 382V 383S 385T 386K 390L 396Y 403R 405D 408R 413G 415T 417K 420D 421Y 428D 455L 463P 464F 465E 466R 467D 468I 469S 471E 503V 505Y 517L 519H 545G 546L 547T 548G 558K 559F 560L 562F 563Q 564Q 565F 566G 567R 569I 570A 571D 588T 589P 590C 591S 592F 613Q 647A 665P 666I 667G 668A 669G 696T 697M 699L 701A 702E 703N 704S 705V 706A 707Y 709N 711S 712I 713A 715P 961T 965Q 968S 969N 970F 971G 985D 986K(P) 987V(P) 1002Q 1006T 1009T 1010Q 1013I 1039R 1040V 1041D 1042F 1045K 1046G 1047Y 1068V 1072E 1074N 1077T 1079P 1089F 1090P 1094V 1107R 1121F 1123S 1124G 1128V 1130I 1141L 1145L (identity: 98.3 %/90.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cab_A_1 identity=90.9%
queryA        25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124
                :*********************************************          *********************************************:
7cab_A_1      25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124
SecStr          :  EEEE TT  EE  SS    S EEEEES B  TT EEEEE    ----------   EEE  SEEEEEEEESS    EEEEESS SSSS EEEEEEETT:    
ExpBur          :eeeebebbebbbbbbeeeeeeeeeeebeebbbbbeeebbebeeee----------ebeebebeebbbbbbbbeeebbbbbbbbbebeeebebbbbbebee:    
Contact         :                           b                                                                        

queryA       125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224
                :************************************************             ***************************************:
7cab_A_1     125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224
SecStr          :EEEEE   EEE SS  EE  SSSSSTT  SS  TTEEEE     EEE -------------  EEEEEEEEEETTEEEEEEEEEE   SSS  SS  EEE:    
ExpBur          :eebbbbbebebeeebebbbeeebeeebeeeebeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebbbbbeeeebeeeebbbeeebbbe:    

queryA       225:PLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324
                :*********************                 **************************************************************:
7cab_A_1     225:PLVDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324
SecStr          :EEE         EEEE  EE -----------------  EEEEE B  EEEEEE TTS EEEEEETTS TTHHHHHHHT S   SEEE  S        :    
ExpBur          :eeeebebebebeebbbbbbee-----------------bbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeeeeeeeee:    
Contact         :                                                                                         b bb b     

queryA       325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424
                :****************************************************************************************************:
7cab_A_1     325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424
SecStr          :EEEE      B  HHHHHT S   BSSS EEEEE S B  GGGGGSSS  SEEEESSS GGGGTT   SSEEEEEEEE GGGGGG STT  SHHHHTT  :    
ExpBur          :ebbbbeeeeeebebeebbebeebebbeebeeeebeebbbbeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbebebbebbbeeeeebbbbebbb:    
Contact         :                              b                         bbb bb   b     b      b b  b    b b b  bb   

queryA       425:LPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524
                :********************  ******************************************************************************:
7cab_A_1     425:LPDDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524
SecStr          :  TT  SEEEEEE TTTS  --     EEE   SS   TT        EE SSS  TTS BTTEE SEEE    TT  TTTS EEEEE     TTS   S:    
ExpBur          :bbeebebbbbbbebbeebbe--ebeebbbbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbbbbebeebebbb:    
Contact         :   b                          b       bbbbbbb b                               b b           b b     

queryA       525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI: 624
                :************************************************************************************************    :
7cab_A_1     525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXX: 624
SecStr          :B S        SSEEEEEETTEE  EEEEE      TT  EEE TT SEEEEE SSS  EEEEE S  S EEEEE  TTT    EEEESS  SS  ----:    
ExpBur          :bbeeeeeebbeeebbebbbbbbeeebebeeeeeebeeeebbbeeeeeebebbbbbeeeebbbbeebeebbbbbbbbbbeebeeebbbbeebeeeee----:    
Contact         :                    bbbb         bbb bbbbbb bbb                bbbbb                    b           

queryA       625:HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724
                :                ************************************            ************************************:
7cab_A_1     625:XXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724
SecStr          :---------------- EEE SS EEES EE     S SEEEETTEEEES  ------------    EEEE            TTEEE  S EEEEEEE:    
ExpBur          :----------------eebebeebbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbbebebebee:    
Contact         :                      b                 bbbbb                          bb b bbbbbbb b bbb b         

queryA       725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824
                :****************************************************************************************************:
7cab_A_1     725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824
SecStr          :EEEE     EEE HHHHHS S HHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  SSS   TTTSEESSSSS EEHHHHHHHH:    
ExpBur          :ebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeebeeeeeeebeebebeebbeeeeeebeebebbbbbbe:    

queryA       825:KVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924
                :***                        *  **********************************************************************:
7cab_A_1     825:KVTXXXXXXXXXXXXXXXXXXXXAMQMAYRFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924
SecStr          :H  --------------------  STTTTTTTEEE   SS TTHHHHHHHHHHHHHHHSTTGGGSSS     HHHHHHHHHHHHT  THHHHHHHHHHH:    
ExpBur          :ebe--------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeebeeebb:    

queryA       925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024
                :*************************************************************  *************************************:
7cab_A_1     925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024
SecStr          :HHHHHHHHHHHHHHHS GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebeebbeebeeebeeeeeebeebbebbeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebbebbee:    
Contact         :                                    b   b  bbbb             bbb              b   b  bb  b           

queryA      1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124
                :****************************************************************************************************:
7cab_A_1    1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124
SecStr          :HHHHHHHTTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE    EEEEES EESSS EEEESSSEEEESSSSEEEE TTS   EE BTTTEEEES:    
ExpBur          :bbebbeebbbeebeeeebbeeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbebeebebbbeeeebbbbbebbeeeeebbeeebeeee:    
Contact         :              bbbb  bbb                    b   b b  b b         bb   b            b             b bb

queryA      1125:NCDVVIGIVNNTVYDPLQPELDS:1147
                :***********************:
7cab_A_1    1125:NCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          : TTT SS EE   B SSHHHHT :    
ExpBur          :ebeeeeebeeeebeeeeeeeeee:    
Contact         :   b b          b   b                                                                               


Input Residue Numbers for Focused Sites

ex) 2,15,123