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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1029 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [1029 aa] | Spike glycoprotein :SPIKE_SARS2 | 52Q 314Q 316S 317N 319R 355R 381G 382V 383S 385T 386K 390L 396Y 403R 405D 408R 413G 415T 417K 420D 421Y 428D 455L 463P 464F 465E 466R 467D 468I 469S 471E 503V 505Y 517L 519H 545G 546L 547T 548G 558K 559F 560L 562F 563Q 564Q 565F 566G 567R 569I 570A 571D 588T 589P 590C 591S 592F 613Q 647A 665P 666I 667G 668A 669G 696T 697M 699L 701A 702E 703N 704S 705V 706A 707Y 709N 711S 712I 713A 715P 961T 965Q 968S 969N 970F 971G 985D 986K(P) 987V(P) 1002Q 1006T 1009T 1010Q 1013I 1039R 1040V 1041D 1042F 1045K 1046G 1047Y 1068V 1072E 1074N 1077T 1079P 1089F 1090P 1094V 1107R 1121F 1123S 1124G 1128V 1130I 1141L 1145L (identity: 98.3 %/90.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cab_A_1 identity=90.9% |
queryA 25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124 :********************************************* *********************************************: 7cab_A_1 25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124 SecStr : EEEE TT EE SS S EEEEES B TT EEEEE ---------- EEE SEEEEEEEESS EEEEESS SSSS EEEEEEETT: ExpBur :eeeebebbebbbbbbeeeeeeeeeeebeebbbbbeeebbebeeee----------ebeebebeebbbbbbbbeeebbbbbbbbbebeeebebbbbbebee: Contact : b queryA 125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224 :************************************************ ***************************************: 7cab_A_1 125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224 SecStr :EEEEE EEE SS EE SSSSSTT SS TTEEEE EEE ------------- EEEEEEEEEETTEEEEEEEEEE SSS SS EEE: ExpBur :eebbbbbebebeeebebbbeeebeeebeeeebeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebbbbbeeeebeeeebbbeeebbbe: queryA 225:PLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324 :********************* **************************************************************: 7cab_A_1 225:PLVDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324 SecStr :EEE EEEE EE ----------------- EEEEE B EEEEEE TTS EEEEEETTS TTHHHHHHHT S SEEE S : ExpBur :eeeebebebebeebbbbbbee-----------------bbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeeeeeeeee: Contact : b bb b queryA 325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424 :****************************************************************************************************: 7cab_A_1 325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424 SecStr :EEEE B HHHHHT S BSSS EEEEE S B GGGGGSSS SEEEESSS GGGGTT SSEEEEEEEE GGGGGG STT SHHHHTT : ExpBur :ebbbbeeeeeebebeebbebeebebbeebeeeebeebbbbeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbebebbebbbeeeeebbbbebbb: Contact : b bbb bb b b b b b b b b bb queryA 425:LPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524 :******************** ******************************************************************************: 7cab_A_1 425:LPDDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524 SecStr : TT SEEEEEE TTTS -- EEE SS TT EE SSS TTS BTTEE SEEE TT TTTS EEEEE TTS S: ExpBur :bbeebebbbbbbebbeebbe--ebeebbbbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbbbbebeebebbb: Contact : b b bbbbbbb b b b b b queryA 525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI: 624 :************************************************************************************************ : 7cab_A_1 525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXX: 624 SecStr :B S SSEEEEEETTEE EEEEE TT EEE TT SEEEEE SSS EEEEE S S EEEEE TTT EEEESS SS ----: ExpBur :bbeeeeeebbeeebbebbbbbbeeebebeeeeeebeeeebbbeeeeeebebbbbbeeeebbbbeebeebbbbbbbbbbeebeeebbbbeebeeeee----: Contact : bbbb bbb bbbbbb bbb bbbbb b queryA 625:HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724 : ************************************ ************************************: 7cab_A_1 625:XXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724 SecStr :---------------- EEE SS EEES EE S SEEEETTEEEES ------------ EEEE TTEEE S EEEEEEE: ExpBur :----------------eebebeebbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbbebebebee: Contact : b bbbbb bb b bbbbbbb b bbb b queryA 725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824 :****************************************************************************************************: 7cab_A_1 725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824 SecStr :EEEE EEE HHHHHS S HHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS SSS TTTSEESSSSS EEHHHHHHHH: ExpBur :ebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeebeeeeeeebeebebeebbeeeeeebeebebbbbbbe: queryA 825:KVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924 :*** * **********************************************************************: 7cab_A_1 825:KVTXXXXXXXXXXXXXXXXXXXXAMQMAYRFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924 SecStr :H -------------------- STTTTTTTEEE SS TTHHHHHHHHHHHHHHHSTTGGGSSS HHHHHHHHHHHHT THHHHHHHHHHH: ExpBur :ebe--------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeebeeebb: queryA 925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024 :************************************************************* *************************************: 7cab_A_1 925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024 SecStr :HHHHHHHHHHHHHHHS GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :eebeebbeebeeebeeeeeebeebbebbeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebbebbee: Contact : b b bbbb bbb b b bb b queryA 1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124 :****************************************************************************************************: 7cab_A_1 1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124 SecStr :HHHHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEES EESSS EEEESSSEEEESSSSEEEE TTS EE BTTTEEEES: ExpBur :bbebbeebbbeebeeeebbeeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbebeebebbbeeeebbbbbebbeeeeebbeeebeeee: Contact : bbbb bbb b b b b b bb b b b bb queryA 1125:NCDVVIGIVNNTVYDPLQPELDS:1147 :***********************: 7cab_A_1 1125:NCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : TTT SS EE B SSHHHHT : ExpBur :ebeeeeebeeeebeeeeeeeeee: Contact : b b b b |