Protein Model on 7a29_A_1_F_1 (TEMPLATE: 7a29 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1058 aa] Spike glycoprotein :SPIKE_SARS2
2 b F 1 (F) polymer(polypeptide(L)) [114 aa] Neutralising sybody (Sb23) 408R (identity: 100.0 %/93.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7a29_A_1 identity=93.2%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :*********************************************************     **************************************:
7a29_A_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEEE S     SSS    S EEEEEEEE  TTEEEEEEEE   ----- TT     EE SS EEEEEEESS  EEEEEEESS SSS:    
ExpBur          :ebbebeeeeeeeeeeeebeebbbbbeeeeeeeeeeeebeebbbbbeeebbbbebeee-----ebbbbbeebebeebbbbbbbbbbebbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7a29_A_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE     SS EEEEEE SSSS EEEEEEES S   S   EEE           SSS  EEEEEEEEEETTEEEEEEEEEE   S:    
ExpBur          :eebbbbbeebeebbbebbbbebeebbbbbbeeeeeeeeeeeebeebeeeeeeeeeeeeeeeeebebeeeeeebeebbbbbbbeeeeebbbbbeebeeebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************    **************************************************************:
7a29_A_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS   S     EEEEE       EEEEEEEEEE ----  TTT  B  SEEEEEEE EEEEEEEEE SSSSEEEEEETTS HHHHHHHHHTSS   SEEE:    
ExpBur          :eebbeeebbbeeeeebebebebeebbbbbbbbbe----eeebeebebbebbbbbbebeeeebbbebbeeeebeebbbbeeeebbebbbeeeebebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7a29_A_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEEE    S EEE          HHHHS S    STT EEEEE S B   HHHHHT   SEE  SSS SSSGGG  BSEEEEEEEEE STHHHHSSTT:    
ExpBur          :ebeeeeeeeeeebebbeeeeeebeeeebbeeeebebbebbeeeebeebebebeeeeeeeeeebeeeeeeeeeebbeeebbbbebbbbbbebebeeebeee:    
Contact         :                                                                                              b     

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :********************************************* ***************** ************************************:
7a29_A_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKXNLKPFERDISTEIYQAGXTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :   HHHHHT    TT  SEEEEEE HHHH  TT B   EEE    -   TT            -   TT SBTTB  SEEE  B TT  TTTS EEEEEE:    
ExpBur          :eeeebbeebbebbeebebbbbbbebeeebbeeebbeebebbeebe-ebeeeeebeeeeeeeee-eebeeeeeeebeebbebbbbeeeeeeeebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :*****  *********************************************************************************************:
7a29_A_1     514:SFELLXXPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  --   BB          SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEEETTTTEEEEEE   EEEEEEEES TTT    EEEEE:    
ExpBur          :bbeee--eeebebbeeeeebeeeebbebebeeeeeebbbeebeeebeeeeeeeeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbeeebeeebbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    **********************************                ***********************:
7a29_A_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYXXXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  TT  -------------------- EEEETTEEEESSEE S     SEEEETTEEEE ----------------  EEEE   S        TT EE:    
ExpBur          :ebebeee--------------------eeeebebbbbeebeeeeeeeebebebeeebbbbe----------------ebebbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7a29_A_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EEEEEEEEEEEEEEE    EEEE HHHHHTSS HHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS  STT   TTTS  TT SS:    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeeebeeeeeeeeebeeebeebbebbeebbeebbbbeeeebebeeeeebeebebeebbeeeeeee:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :***************                          ***********************************************************:
7a29_A_1     814:KRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :S  HHHHHHHHHS  --------------------------  SEEEE  SS HHHHHHHHHHHHHHHHHHTTSGGGSS     SHHHHHHHHHHTT  H:    
ExpBur          :ebbebbbbbbeebee--------------------------eeeeeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7a29_A_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHHT   TTHHHHHHHHHHHHHHHHHHHHTT  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7a29_A_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTTS   STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEE   S EEETTEEEEESSSEEEESSS EEEEETTEEEEE:    
ExpBur          :bbeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
                :*********************************:
7a29_A_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
SecStr          :E BSSSEEE S SSSSTT EE   B TTHHHH :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123