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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1058 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | D 1 (D) | polymer(polypeptide(L)) [114 aa] | Neutralising sybody (Sb23) | 444K 445V 446G 447G 448N 449Y 450N 452L 470T (identity: 100.0 %/93.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7a29_A_1 identity=93.2% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* **************************************: 7a29_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEE S SSS S EEEEEEEE TTEEEEEEEE ----- TT EE SS EEEEEEESS EEEEEEESS SSS: ExpBur :ebbebeeeeeeeeeeeebeebbbbbeeeeeeeeeeeebeebbbbbeeebbbbebeee-----ebbbbbeebebeebbbbbbbbbbebbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7a29_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE SS EEEEEE SSSS EEEEEEES S S EEE SSS EEEEEEEEEETTEEEEEEEEEE S: ExpBur :eebbbbbeebeebbbebbbbebeebbbbbbeeeeeeeeeeeebeebeeeeeeeeeeeeeeeeebebeeeeeebeebbbbbbbeeeeebbbbbeebeeebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** **************************************************************: 7a29_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EEEEE EEEEEEEEEE ---- TTT B SEEEEEEE EEEEEEEEE SSSSEEEEEETTS HHHHHHHHHTSS SEEE: ExpBur :eebbeeebbbeeeeebebebebeebbbbbbbbbe----eeebeebebbebbbbbbebeeeebbbebbeeeebeebbbbeeeebbebbbeeeebebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7a29_A_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE S EEE HHHHS S STT EEEEE S B HHHHHT SEE SSS SSSGGG BSEEEEEEEEE STHHHHSSTT: ExpBur :ebeeeeeeeeeebebbeeeeeebeeeebbeeeebebbebbeeeebeebebebeeeeeeeeeebeeeeeeeeeebbeeebbbbebbbbbbebebeeebeee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :********************************************* ***************** ************************************: 7a29_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKXNLKPFERDISTEIYQAGXTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : HHHHHT TT SEEEEEE HHHH TT B EEE - TT - TT SBTTB SEEE B TT TTTS EEEEEE: ExpBur :eeeebbeebbebbeebebbbbbbebeeebbeeebbeebebbeebe-ebeeeeebeeeeeeeee-eebeeeeeeebeebbebbbbeeeeeeeebbbbbbbb: Contact : bbbbbbb b b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :***** *********************************************************************************************: 7a29_A_1 514:SFELLXXPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEE -- BB SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEEETTTTEEEEEE EEEEEEEES TTT EEEEE: ExpBur :bbeee--eeebebbeeeeebeeeebbebebeeeeeebbbeebeeebeeeeeeeeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbeeebeeebbbee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ********************************** ***********************: 7a29_A_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYXXXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T TT -------------------- EEEETTEEEESSEE S SEEEETTEEEE ---------------- EEEE S TT EE: ExpBur :ebebeee--------------------eeeebebbbbeebeeeeeeeebebebeeebbbbe----------------ebebbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7a29_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EEEEEEEEEEEEEEE EEEE HHHHHTSS HHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHHTT SS SS STT TTTS TT SS: ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeeebeeeeeeeeebeeebeebbebbeebbeebbbbeeeebebeeeeebeebebeebbeeeeeee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :*************** ***********************************************************: 7a29_A_1 814:KRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr :S HHHHHHHHHS -------------------------- SEEEE SS HHHHHHHHHHHHHHHHHHTTSGGGSS SHHHHHHHHHHTT H: ExpBur :ebbebbbbbbeebee--------------------------eeeeeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7a29_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHT TTHHHHHHHHHHHHHHHHHHHHTT TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7a29_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTTS STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEE S EEETTEEEEESSSEEEESSS EEEEETTEEEEE: ExpBur :bbeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146 :*********************************: 7a29_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146 SecStr :E BSSSEEE S SSSSTT EE B TTHHHH : ExpBur :ebbeeebeeeeebeeeeeeeeeebeeeeeeeee: |