Protein Model on 7a25_A_1_N_1 (TEMPLATE: 7a25 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1058 aa] Spike glycoprotein :SPIKE_SARS2
2 b N 1 (Q) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 122N 123A 124T 125N 127V 154E 171V (identity: 100.0 %/93.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7a25_A_1 identity=93.2%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :*********************************************************     **************************************:
7a25_A_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEEESS   B SSS   SS EEEEEEEE  TTEEEEEEEE   ----- TT    EEE SSEEEEEEEESS  EEEEEEESSSSSS:    
ExpBur          :ebbebeeeeeeeeeebebebbbbbbbeeeeeeeeeeebeebbbbbeeebbbbebeee-----ebbbbbeebebeebbbbbbbbebbbbbbbbbbbebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7a25_A_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE     SS EEEEEEETTTTEEEEEEEES S   S   EEE            SS  EEEEEEEEEETTEEEEEEEEEE   S:    
ExpBur          :eebbbbbeeeebebbebbebebeebbbbbbeeeeeeeeeeeebeebeeeeeeeeeeeeeeeeeeebeeeeeebeebebbbbbeeeeebbbbbeeeebebe:    
Contact         :        bbbb b                          b                b                                          

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************    **************************************************************:
7a25_A_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS   S   BEEEEEE       EEEEEEEEEE ----  TTTS B  SEEEEEEE EEEEEEEEE SSSSEEEEEETTS HHHHHHHHHTSS   SEEE:    
ExpBur          :eebbeeeebbeeeeebeeebebeebbbbbbbbbe----eeeeeebebbebbbbbbebeeeebbbebbeeeebeebbbbeeeebbebbbeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7a25_A_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEEE    S EEE         HHHHHS S    GGG EEEEE SSB   HHHHHT   SEEEEESS SSS TT  BSEEEEEEEEE STHHHHSSTT:    
ExpBur          :ebeeeeeeeeeebebbeeeeeebebeebbebeebebbebbeeeebeebebebeebeeeeebeeeebeeeeeeebeeeebbbbebbbbbbebebeebbbbe:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :********************************************* ***************** ************************************:
7a25_A_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKXNLKPFERDISTEIYQAGXTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :   HHHHHT    TT  EEEEEEE TTTT  TT B   EEE    -   TT            -   SSSSBTTB  SEEE  B SSS TTTS EEEEEE:    
ExpBur          :eeeebbeebbebbeebebbbbbbebeeebbeeeebeebebbeeee-ebeeeeebeeeebeeee-eebeeeeeeebeebbebbbbeeeeeeeebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :*****  *********************************************************************************************:
7a25_A_1     514:SFELLXXPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  --   BB          SSEEEEEETTEEEEEEEEE      TT  EEEETTTEEEEEEETTTTEEEEEE   EEEEEEEES TTT    EEEEE:    
ExpBur          :bbeee--eeebbbbeeeeeebeeebbebebeeeeeebbbeebeeebeeeeeeeeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeebbbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    **********************************                ***********************:
7a25_A_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYXXXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  TT  --------------------  EEETTEEEES EE S     SEEEETTEEEE ----------------  EEEE   S        TTEEE:    
ExpBur          :ebebeee--------------------eeeebeebbbeebeeeeeeeebebebeeebbbbe----------------ebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7a25_A_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EEEEEEEEEEEEEEE    EEEE HHHHHTSS HHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TT SS:    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbbbeeebebeeeeebeebebeebbeeeeeeb:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :***************                          ***********************************************************:
7a25_A_1     814:KRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :S  HHHHHHHHHS  --------------------------  SEEEE  SS HHHHHHHHHHHHHHHHHTTTSGGGSS     SHHHHHHHHHHHT  H:    
ExpBur          :ebbebbbbbbeebee--------------------------eebeeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7a25_A_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHSHHHHHHHHHHHHHHHHHHHHTS  TTHHHHHHHHHHHHHHHHHHHHTT  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebeeebeeeeeebeebeebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7a25_A_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTTS   STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEE  S EEETTEEEEESSSEEEESSS EEEE SSS   E:    
ExpBur          :bbeebeebbeebbebbeebbbbebeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
                :*********************************:
7a25_A_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
SecStr          :E BSSSEEE S SSSSTT EE   B TTHHHH :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123