Protein Model on 6zxn_A_1_F_1 (TEMPLATE: 6zxn )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1060 aa] Spike glycoprotein :SPIKE_SARS2
2 b F 1 (F) polymer(polypeptide(L)) [118 aa] Nanobody Ty1 378K (identity: 100.0 %/93.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zxn_A_1 identity=93.4%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :*********************************************************     **************************************:
6zxn_A_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :             EEEEE S   B SSS    S EEEEEEEE  TTEEEEEEEE   -----        EE SS EEEEEEESS  EEEEEEESSSSSS:    
ExpBur          :ebbebeeeeeeeeeebebeebbbbbbeeeeeeeeebebeeebbbbebebbbbbbeee-----ebbbbbeebebeebbbbbbbbebbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
6zxn_A_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE     SS EEEEEEETTTTEEEEEEEES S   SEEEEEE            SS  EEEEEEEEEETTEEEEEEEEEE   S:    
ExpBur          :ebbbbbbebbebebbbbbbbebbebbbbbbeebeeeeeeeeebeebeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbeeeeebbbbbeeeeeebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************    **************************************************************:
6zxn_A_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS   S   BEEEEEE       EEEEEEEEEE ----  TTTS B  SEEEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHTSS   SEEE:    
ExpBur          :eebbeeebbbeeeeebebebebeebbbbbbbbbe----eeeeeebebbebbbbbbbbeeeebbbebeeeeebeebbbbeeeebbebbbeeeebebeebeb:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
6zxn_A_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEEE    S EEE      B  HHHHHT S    STT EEEEE SSB  HHHHHS S  SEEEEESS SS GGG  BSEEEEEEEEEEGGGSTT STT:    
ExpBur          :ebeeeeeeeeeebebbeeeeeebebeebbebeebebbbbbeeeebbebbbbbeebeeeeebebeebeeeeeeebeeebbbbbebbbbbbebebeeebbee:    
Contact         :                                                                b                                   

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
6zxn_A_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :   HHHHHT    TT  EEEEEEE HHHH  TT BTT EEE   SS   TT        EE SSS  SS  BTTEE SEEE  B TT  TTTSEEEEEEE:    
ExpBur          :eeeebbbebbbbbeebebbbbbbebeeebbeeebeeebebbeebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbebbbbeeebeebeebbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :*****  *********************************************************************************************:
6zxn_A_1     514:SFELLXXPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  --   BB          SS EEEEETTEEEEEEEEE      TT  EEEETTTEEEEEEETTTTEEEEEE   EEEEEEEES TTT    EEEEE:    
ExpBur          :bbeee--eeebebbeeeeebebeebbebebeeeeeebebeeeeeebeeeeeeeeeeeeebebbbbbeeeeebebeebeebbbbbbbbbbeebeebbbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    **********************************                ***********************:
6zxn_A_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYXXXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  TT  --------------------  EEETTEEEES EE S     SEEEETTEEEE ----------------  EEEE            TT EE:    
ExpBur          :ebebeee--------------------eebebebbbbeebeebeeeeebebebeeebbbbe----------------ebebbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
6zxn_A_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EEEEEEEEEEEEEEE    EEEE HHHHHTSS HHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TT SS:    
ExpBur          :bbeebebebeeebbbbbbbbbbbebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbbbbeeeeeeeeeeebeebebeebbeeeeeeb:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :***************                          ***********************************************************:
6zxn_A_1     814:KRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :S  HHHHHHHHTS  --------------------------  SEEEE  SS HHHHHHHHHHHHHHHHHHTTGGGSSS     SHHHHHHHHHHHT  H:    
ExpBur          :ebbebbbbbbeebee--------------------------eebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
6zxn_A_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHTSHHHHHHHHHHHHHHHHHHHHTS  TTHHHHHHHHHHHHHHHHHHHHTT  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebbeebeebeeebeeebebeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
6zxn_A_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EEETTEEEEESSSEEEESSS EEEEBTTB    :    
ExpBur          :bbeebeebbeebbebbeebbbbebeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbbee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
                :*********************************:
6zxn_A_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
SecStr          :B BSSSEEE S SSSSTT EE   B TTHHHH :    
ExpBur          :ebbeebbeeeeebeeeeeeeeeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123