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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1097 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | U 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 309E 603N (identity: 100.0 %/97.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zp2_A_1 identity=97.1% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* *************************************: 6zp2_A_1 5:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 104 SecStr : EEEEE S B SSS SEEEEEEEEE TTEEEEEEEEB ------ B EEE TTSEEEEEEESS EEEEEEESS BSS: ExpBur :eeeebeeeeeeeeeebebebbbbbbbeeeeebeeeeebeebbbbbebebebbbbbee------eebebeebebeebbbbbbbbbbbbbbbbbbbbebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6zp2_A_1 105:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 204 SecStr :S EEEEEE SS EEEEEE EEEEEEEEEEE SSSS EEEEEEEEEE S EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbbeebeeebbebbbbebbebbbbbbeebeeeeebeeebebbeeeeeeeeeeeebeeeeeebebeeeebeebebbbbbeeeeebebbeeebebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :****************************************************************************************************: 6zp2_A_1 205:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 304 SecStr :SS S BEE EEE EEEEEEEEEE TTS SSTTTS B EEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS SEEE: ExpBur :eebbeeebbbeeeeebebebebeebbbbbbbbbbeebeeeebebbbbbebbbbbbebeeeebbbebbeebebeebbbbeeebbbbbbbeeeebebeebee: Contact : b queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6zp2_A_1 305:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 404 SecStr :E B EEEE B HHHHHS S BGGG EEEEE SEE THHHH SEEEEESS TTSGGG EEEEEEEEEEEEEGGGGGGSSTT: ExpBur :ebeebeeeeeeebbbbbeeeeebebeebbeeeebebbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6zp2_A_1 405:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 504 SecStr : SHHHHHT SS EEEEEEE TTTS TT B EEE SS TT EE SSS TT BTTEE SEEE B TTS GGGSEEEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeebeeebeeebeeeeeeebeebbeebebeeeeeebebbbbbbbe: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 6zp2_A_1 505:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 604 SecStr :EEEESSS EE S SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE SSS EEEEE S BS EEEEE TTT S EEEET: ExpBur :bbebeeeebebbbeeeeeebeeeebbebbbbbbeeebbbeebeeebeeeebbbeeeeeebbbbbbbeeeebbebeebeebbbbbbbbbeeebeeebbbbe: Contact : b queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :***** ********************************************* *************************: 6zp2_A_1 605:DVNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 704 SecStr :T ------------- SSS S EEEETTEEEES EE SS SEEEETTEEEEEE ------------ EEEEEE S TTEEE: ExpBur :ebebe-------------eeebeeeeeeebebebbbbbebeebeeeeeeebebeeebbbebee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6zp2_A_1 705:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 804 SecStr :EEEEEEEEEEEEEEE EEEE HHHHHSTT HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH SS S STT TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeebeeebeebeeebeebbeebbebbeebbbebeeeeeeeeeeebeebebeebbeeeebeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 6zp2_A_1 805:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 904 SecStr : HHHHHHHTTS SSSSS HHHHHS TTS HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT H: ExpBur :ebbebbbbbeeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 6zp2_A_1 905:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1004 SecStr :HHHHHTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbebbeebbeebeeebeeeeeebeebbebbeebeebbbebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6zp2_A_1 1005:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1104 SecStr :HHHHHHHHHHHHHHHHHHHTSS STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS B: ExpBur :bbeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPL:1141 :****************************: 6zp2_A_1 1105:IITTDNTFVSGNCDVVIGIVNNTVYDPL:1132 SecStr : BTTTEEEEEETTTSTT EE B : ExpBur :ebbeebbeeeeebeeeeeeeeeebeeee: |