Protein Model on 6zp1_A_1_QA_1 (TEMPLATE: 6zp1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1017 aa] Spike glycoprotein :SPIKE_SARS2
2 b QA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 558K (identity: 100.0 %/91.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zp1_A_1 identity=91.4%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6zp1_A_1      18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117
SecStr          : EEE  S   B SSS    SEEEEEEEEE  TT EEEEE S  ----------    EE  S EEEEEEESS  EEEEEEESS BSSS  EEEEE SS E:    
ExpBur          :eebebebbbbbbbeeeeeeeeeeebeeebbbbeeebeebebee----------ebeebebeebbbbbbbbebbbbbbbbbbbebeeeeebbbbbbeeeee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************         ***********************    ***********************************************:
6zp1_A_1     118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFXXXXEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217
SecStr          :EEE    B  SS  EE ---------   SS S S   S   EEE    ----    SSEEEEEEEEEEEETTEEEEEEEEEEEEE SSS SS   BEEE:    
ExpBur          :bbbbbbbebeeebbbbe---------eeeeeeeeeeeeeeeeeeebeee----eeeeeebeebebbbbbeeeeebbbbbeebebeeeeebbeeeebbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*******************                *****************************************************************:
6zp1_A_1     218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317
SecStr          :EEEE      EEEEEEEE ----------------   EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS   SEEEEEEEEE   SSEE:    
ExpBur          :eebeeebebeebbbbbbee----------------ebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeeeeeeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6zp1_A_1     318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417
SecStr          :EE      B   HHHHS S    GGG EEEEE SEE  HHHHHHSTT SEEEESSS SSTTTT  BS EEEEEEEEEGGGGGGSSTT  SHHHHHT    :    
ExpBur          :ebbeeeeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebeeebbebbbbbbbbbbbebeebbbbeeeeebbbbbbbbb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6zp1_A_1     418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517
SecStr          :TT   EEEEEE TTTT  TT B   EEE   SS   SS        EESSSS  SS  STTEE SEEE  B TTS GGGSEEEEEEEEE  SSS   EE :    
ExpBur          :eebebbbbbbebeeebbeeebbeebeebeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebbbeeebeeeebbbbbbbbbbbebeeebbbbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6zp1_A_1     518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617
SecStr          :S        SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEET  SS  ------:    
ExpBur          :eeeeeebeeeebbebbbbebeeebebeeeeeebeeeeeebeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbeeebeebbbbeeebeeeee------:    
Contact         :                               b                                                                    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :              ************************************            **************************************:
6zp1_A_1     618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------- EEEETTEEEES EE SS B  SEEEETTEEEEEE ------------  EEEEEEB  S        TTEEEEEEEEEEEEEEEE:    
ExpBur          :--------------eebebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6zp1_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE     EEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TTSSS   HHHHHHHTT :    
ExpBur          :bbbbbebbebebeebbbeebeebbebbeeeeeebeebeeebeebbeebeebbeebbeebeeebebeeeeebeebebeebbeeeeeebebbebbbbbbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :*                          *************************************************************************:
6zp1_A_1     814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          : --------------------------  SSEEE   SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHTTT  HHHHHHTHHHHHHH:    
ExpBur          :e--------------------------eeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
6zp1_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHHTT  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebeebbeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6zp1_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS   EE BTTTEEEEEET:    
ExpBur          :ebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbeeeebbeebbeeeeee:    

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
6zp1_A_1    1114:DVVIGIVNNTVYDP:1127
SecStr          :TSSTT EE   B  :    
ExpBur          :eeeeeeeeeebeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123