Protein Model on 6zp0_A_1_PA_1 (TEMPLATE: 6zp0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1030 aa] Spike glycoprotein :SPIKE_SARS2
2 b PA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 457R 459S 460N 462K (identity: 100.0 %/92.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zp0_A_1 identity=92.2%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6zp0_A_1      18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117
SecStr          : EEE  S   B SSS    SEEEEEEEEE  TT EEEEEE   ----------    EE  S EEEEEEESS  EEEEEEESS SSSS EEEEEE SS E:    
ExpBur          :eebebebbbbbbbeeeeeeeeeeebeebbbbbeeebbbbebee----------ebeebebeebbbbbbbbbbbbbbbbbbbeebebeebbbbbbeebeee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************         **************************************************************************:
6zp0_A_1     118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217
SecStr          :EEEEE  EEEEEEE   ---------     EEEEE  S  EEEE        S   SS  EEEEEEEEEETTEEEEEEEEEE   SSS  SS   BEEE:    
ExpBur          :ebebbebebbeebbbbe---------eeeeeebeeeeeeeeeeeebeeeeeebeeeeeebebbbbbbbbeeeeebbbbbeeeebeeeebbbeeeebbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*******************              *******************************************************************:
6zp0_A_1     218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317
SecStr          :EEEE      EEEEEE   --------------    EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS   SEEEEEEEEE   SSEE:    
ExpBur          :eebebebebeebbbbbbee--------------ebebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeebeeeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6zp0_A_1     318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417
SecStr          :EE      B   HHHHS S   BGGG EEEEE SEE  HHHHHHSTT SEEEEESS TTTTTT EES EEEEEEEEEGGGGGGSSTT  SHHHHHT    :    
ExpBur          :ebbbeeeeebebeebbeeeebebbeebeeeebbebbbebeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbebebeebbbbeeeeebbbebbebb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6zp0_A_1     418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517
SecStr          :TT  EEEEEEE TTTT  TT B   EEE   SS   TT        EESSSS  SS  BTTEE SEEE  B TTS GGGSEEEEEEEEE  SSS   EE :    
ExpBur          :eebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbebbebeeeeeebebbbbbbbbbbeeeeeebbbbb:    
Contact         :                              b bb b                                                                

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6zp0_A_1     518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617
SecStr          :S        SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEET  TTT ------:    
ExpBur          :eeeeeeeeeeebbebbbbeeeeebebeebeeebeeeebebeeeeeebebbbbeeeeebbbbeebeebbbbbbbbbeeebeebbbbeeebeeeee------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :              ************************************            **************************************:
6zp0_A_1     618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------- EEEETTEEEES EE SS B  SEEEETTEEEEEE ------------  EEEEEEB  S        TTEEEEEEEEEEEEEEEE:    
ExpBur          :--------------eebebebbbbeebeebeeeeeeebebeeebbbbbee------------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6zp0_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE    EEEE HHHHHTSS HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TTSSS   HHHHHHHTT :    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbebbeeebeeeeeeebeebebeebbeeeeeeeebbebbbbbbebb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :*                          *************************************************************************:
6zp0_A_1     814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          : -------------------------- TTSEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHTTT  THHHHHTHHHHHHH:    
ExpBur          :e--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :****************************************************************************************************:
6zp0_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebbebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6zp0_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS   EE BTTTEEEEEET:    
ExpBur          :ebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbbeeeebbbbbeebbbeeebbeeebeeeeeb:    

queryA      1127:DVVIGIVNNTVYDPLQPELDS:1147
                :*********************:
6zp0_A_1    1114:DVVIGIVNNTVYDPLQPELDS:1134
SecStr          :TTSTT EE   B TTHHHHH :    
ExpBur          :eeeeeeeeeebeeeeeeeeee:    


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