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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1021 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | R 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 108T 234N 236T (identity: 100.0 %/91.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zoy_A_1 identity=91.6% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6zoy_A_1 18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117 SecStr : EEE TT EE SSS SEEEEEE B TT EEEE ---------- EE TTSEEEEEEESS EEEEEEESS SSSS EEEEE SS E: ExpBur :eebebbebbbbebeeeeeeeeeeebeeebbbbeeebbbeeeee----------eeeebebeebbbbbbbbbbbbbbbbbbbeebeeeeebbbbbbebebe: Contact : b queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** **************************************************************************: 6zoy_A_1 118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217 SecStr :EEE B SS EE --------- S S BS S EEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS EEEEE: ExpBur :bbbbbbbebeeebbbbb---------eeeeeebeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeeeebbbbbeeeebeeeeebeeeebbbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :******************* *****************************************************************: 6zoy_A_1 218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317 SecStr :EEEE EEEEEEEE ---------------- EEEEE B EEEEEE TTS EEEEEEGGG HHHHHHHHHTSS SEEEEEEEEE SSEE: ExpBur :eebeeebebeebbbbbbee----------------ebbbbbbebeeeebbbebeeebebbebbbbeeeebbebbbeeeeeebeebeeebeeeeeeeeeeb: Contact : b b queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :******************************************************** *******************************************: 6zoy_A_1 318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVCPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417 SecStr :EE B HHHHT SS BGGG EEEEE SEE HHHHH TT SEEEEESS TTSTTS EESEEEEEEEEEEGGGGGGSSTT SHHHHHT : ExpBur :bbbbeeeeebebeebbeeeebebbbebeeeebeebbbebeebeeeeebeeeebeeeeeeebeeebbbbbbbbbbbbebebeebbbeeeeeebbbbbbbbb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6zoy_A_1 418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517 SecStr :TT EEEEEEE TTTT TT B EEE SS TT B SSS SS BTTBB SEEE B TTS GGGSEEEEEEEEEE S EE : ExpBur :eebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeebbeeeeeebeeeeeebbeebeeebebeeeeeeeebbbbbbbbbbeeeeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 6zoy_A_1 518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617 SecStr :S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET TT ------: ExpBur :eeeeeeeeeeebbebbbbebeeebbbeeeeeebeeeebebeeeeeeeebbbbbeeeebbbbeebeebbbbbbbbbeeebeeebbbeeebebeee------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ************************************ **************************************: 6zoy_A_1 618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :-------------- EEEETTEEEES EE SS B EEEETTEEEEEE ------------ EEEEEEB S TTEEEEEEEEEEEEEEEE: ExpBur :--------------eebebebbbbeebeebeeeeeeebebeeebbbbbee------------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6zoy_A_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSS HHHHHHHTT : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeeeebebbebbbbbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :* *************************************************************************: 6zoy_A_1 814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : -------------------------- TTSEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHH: ExpBur :e--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :********************************************************** ***************************************: 6zoy_A_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbebbeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6zoy_A_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS EE BTTTEEEEEET: ExpBur :ebbeebbbebbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebeeeeebbeebbeeeeeb: queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 6zoy_A_1 1114:DVVIGIVNNTVYDP:1127 SecStr :TT TT EE B : ExpBur :eeeeeeeeeebeee: |