Protein Model on 6zoy_A_1_R_1 (TEMPLATE: 6zoy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1021 aa] Spike glycoprotein :SPIKE_SARS2
2 b R 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 108T 234N 236T (identity: 100.0 %/91.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zoy_A_1 identity=91.6%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6zoy_A_1      18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117
SecStr          : EEE  TT EE SSS    SEEEEEE  B  TT EEEE     ----------    EE TTSEEEEEEESS  EEEEEEESS SSSS  EEEEE SS E:    
ExpBur          :eebebbebbbbebeeeeeeeeeeebeeebbbbeeebbbeeeee----------eeeebebeebbbbbbbbbbbbbbbbbbbeebeeeeebbbbbbebebe:    
Contact         :                                                                                 b                  

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************         **************************************************************************:
6zoy_A_1     118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217
SecStr          :EEE  B    SS  EE ---------      S S  BS S EEE        S   SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS      EEEEE:    
ExpBur          :bbbbbbbebeeebbbbb---------eeeeeebeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeeeebbbbbeeeebeeeeebeeeebbbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*******************                *****************************************************************:
6zoy_A_1     218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317
SecStr          :EEEE      EEEEEEEE ----------------   EEEEE B  EEEEEE TTS EEEEEEGGG HHHHHHHHHTSS   SEEEEEEEEE   SSEE:    
ExpBur          :eebeeebebeebbbbbbee----------------ebbbbbbebeeeebbbebeeebebbebbbbeeeebbebbbeeeeeebeebeeebeeeeeeeeeeb:    
Contact         :       b b                                                                                          

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :******************************************************** *******************************************:
6zoy_A_1     318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVCPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417
SecStr          :EE      B   HHHHT SS  BGGG EEEEE SEE   HHHHH TT SEEEEESS TTSTTS EESEEEEEEEEEEGGGGGGSSTT  SHHHHHT    :    
ExpBur          :bbbbeeeeebebeebbeeeebebbbebeeeebeebbbebeebeeeeebeeeebeeeeeeebeeebbbbbbbbbbbbebebeebbbeeeeeebbbbbbbbb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6zoy_A_1     418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517
SecStr          :TT  EEEEEEE TTTT  TT B   EEE   SS   TT        B SSS   SS  BTTBB SEEE  B TTS GGGSEEEEEEEEEE   S   EE :    
ExpBur          :eebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeebbeeeeeebeeeeeebbeebeeebebeeeeeeeebbbbbbbbbbeeeeeebebbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6zoy_A_1     518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617
SecStr          :S        SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEET  TT  ------:    
ExpBur          :eeeeeeeeeeebbebbbbebeeebbbeeeeeebeeeebebeeeeeeeebbbbbeeeebbbbeebeebbbbbbbbbeeebeeebbbeeebebeee------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :              ************************************            **************************************:
6zoy_A_1     618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------- EEEETTEEEES EE SS B   EEEETTEEEEEE ------------  EEEEEEB  S        TTEEEEEEEEEEEEEEEE:    
ExpBur          :--------------eebebebbbbeebeebeeeeeeebebeeebbbbbee------------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6zoy_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE    EEEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TTSSS   HHHHHHHTT :    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeeeebebbebbbbbbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :*                          *************************************************************************:
6zoy_A_1     814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          : -------------------------- TTSEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHTTT  THHHHHTHHHHHHH:    
ExpBur          :e--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :**********************************************************   ***************************************:
6zoy_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebbebbeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6zoy_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS   EE BTTTEEEEEET:    
ExpBur          :ebbeebbbebbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebeeeeebbeebbeeeeeb:    

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
6zoy_A_1    1114:DVVIGIVNNTVYDP:1127
SecStr          :TT TT EE   B  :    
ExpBur          :eeeeeeeeeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123