Protein Model on 6zox_A_1_WA_1 (TEMPLATE: 6zox )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1017 aa] Spike glycoprotein :SPIKE_SARS2
2 b WA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 794I 796D (identity: 100.0 %/91.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zox_A_1 identity=91.4%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6zox_A_1      18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117
SecStr          : EEE  S   B SSS    SEEEEEEEEE  TT EEEEE    ----------   EEE  S EEEEEEESS  EEEEEEESS BSSS EEEEEE SSEE:    
ExpBur          :eeeebebbbbbbeeeeeeeeeeeebebbbbbbeeebeeeebee----------ebeebebeebbbbbbbbbbbbbbbbbbbbebebeeebbbbbbbbeee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************         **********************************************************     ***********:
6zox_A_1     118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIXXXXXLPQGFSALEPL: 217
SecStr          :EEEEE  BB SS  EE ---------    B SBS   S  EEEEEEE     S   S   EEEEEEEEEETTEEEEEEEEEE -----   S   BEEE:    
ExpBur          :bbbbbebebeeebebbb---------eeeeeebbeeeeeeeeeeeeeeeeeeeeeeeeebeebbbbbbbeeeeebbbbbeeeee-----beeeebbbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*******************               ******************************************************************:
6zox_A_1     218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317
SecStr          :EEE       EEEEEEEE ---------------    EEEEE EEEEEEEEE TTS EEEEEESSSSHHHHHHHHHTSS   SEEEEEEEEE   SSEE:    
ExpBur          :eebebebebeebbbbbbee---------------bbbbbbbbebeeeebbbebeeebebbebbbbeeeebbebbbeeeebebeebebebeeeeeeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :************************************************************************************** *************:
6zox_A_1     318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPCQTGKIADYNYKLP: 417
SecStr          :EE      B   HHHHT S   BGGG EEEEE SEE  HHHHHH TT SEEEEESS TTTTTT EEEEEEEEEEEEEGGGGGGSSSS  STTTTTT    :    
ExpBur          :bbbeeeeeebebeebbebeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebbeebbbbbbbbbbbbebebeebbbbeeeeebbbbbbbbe:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6zox_A_1     418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517
SecStr          :SS  EEEEEEE  SSS  TT     EEE   SS   TT        EESSS   SSS BTTEE SEEE    TTS TTTSEEEEEEEEEEESSS   EE :    
ExpBur          :eebebbbbbbebeeebbeeebbeebebbbeeeeebeeeeebeeeebbbeeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeebeeebebbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6zox_A_1     518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617
SecStr          :S        SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEETS TT  ------:    
ExpBur          :eeeeeebeeeebbebbbbbeeeebbbeebeeebeeeebebeeeeeebebbbbbeeeebbebeebeebbbbbbbbbeeebeeebbbbeebeeeee------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :              ************************************            **************************************:
6zox_A_1     618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------- EEEETTEEEESSEE SS B  SEEEETTEEEEEE ------------  EEEEEEB  S        TTEEEEEEEEEEEEEEEE:    
ExpBur          :--------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eebbbbbeebeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6zox_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE    EEEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TTSSS   HHHHHHHTT :    
ExpBur          :bbbbbebbebebeebbbbebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebebeeeeebeebebeebbeeeeeebebbebbbbbbebb:    
Contact         :                                                                   b b                              

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :*                          *************************************************************************:
6zox_A_1     814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          : --------------------------  SSEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHTTT  THHHHHTHHHHHHH:    
ExpBur          :e--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :************************************************************ ***************************************:
6zox_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebbeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6zox_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS   EE BTTTEEEEEET:    
ExpBur          :ebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbeeeeebbeebbeeeeee:    

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
6zox_A_1    1114:DVVIGIVNNTVYDP:1127
SecStr          :TSSTT EE   B  :    
ExpBur          :eeeeeeeeeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123