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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1098 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | V 1 (V) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 15C 17N 137N (identity: 100.0 %/96.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zgi_C_1 identity=96.7% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* **************************************: 6zgi_C_1 45:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 144 SecStr : EEEEESS B SS SEEEEEEEEE TTEEEEEEEE ----- EEE SS EEEEEEESS EEEEESS SSS: ExpBur :eeeebeeeeeeeeeebebeebbbbbbeeeeeeeeeeebeeebbbbeeebebbebeee-----ebbbbbeebebeebbbbbbbbbbebbbbbbbbeebeee: Contact : b b queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6zgi_C_1 145:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 244 SecStr :S EEEEEE SS EEEEEE EEEEEEEEEEEEEETTTTEEEEEEEEEEEEE EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbbeebebebbbbbebebbebbbbbbebeeeeeeeeeebeebeeeeeeeeeeeeeeeeeeebeeeeeebeebebbbbbeeeeebebbbeeeebebe: Contact : b queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :****************************************************************************************************: 6zgi_C_1 245:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 344 SecStr :SS BEEEEEEE EEEEE EEEE TTS S TTT B EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEE: ExpBur :eebeeeeebbeeeeebebebebeebbbbbbbbbbeebeeeebebbebeebbbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeebebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6zgi_C_1 345:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 444 SecStr :E EEEEE SB TTTTSS S BSTT EEEEE S B GGGGTTT SEEEEESS GGGGGG EEEEEEEEEEEEGGGGGGSSTT: ExpBur :ebeebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6zgi_C_1 445:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 544 SecStr : SHHHHHT SS EEEEEEE HHHH SS B EEE SS TT EE SSS SS TTEE SEEE B SS GGGSEEEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbe: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 6zgi_C_1 545:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 644 SecStr :EEEESSS S S SS EEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEET: ExpBur :bbebeeeebebbbeeeeeeeeeeebbebbbbbbeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeebbebeebeebbbbbbbbbbeeeeeebbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :**** ******************************************** *************************: 6zgi_C_1 645:DVNCXXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 744 SecStr :T --------------- S S EEEETTEEEES EE S SEEEETTEEEEEE ------------ EEEEEE SS EE: ExpBur :ebee---------------eebeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6zgi_C_1 745:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 844 SecStr :EE EEEEEEEEEEE EEEE HHHHHTTT HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH S SS STT TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeeebeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 6zgi_C_1 845:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 944 SecStr : HHHHHHHTSS S S S TTTS SSSTTTSHHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTGGGTSS HHHHHHHHHHTTT H: ExpBur :ebbebbbbbbeebeeeeeeeeeeeeebeeeebeeeebbbbeeebbeeeeeeeeeeebbebbebbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :*************************** ****************************************** **************************: 6zgi_C_1 945:NVLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1044 SecStr :HHHHHTHHHHHHHHHHHHHHHHHHH --- HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHSSS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebeeebee---ebeebbebbeebeebbbebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6zgi_C_1 1045:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1144 SecStr :HHHHHHHHHHHHHHHHHHHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSS EEEESSSEEEESSS EEEEETTEEEEE: ExpBur :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebebbbeebeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146 :*********************************: 6zgi_C_1 1145:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1177 SecStr : TTTEEE S SSS TT EE TTHHHH : ExpBur :ebbeeebeeeeebeeeeeeeeeebeeeeeeeee: |