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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1077 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [875 aa] | Spike glycoprotein :SPIKE_SARS2 | 38Y 41K 42V 43F 44R 45S 47V 225P 281E 737D 739T 740M 744G 745D 755Q 756Y 758S 759F 762Q 765R 786K 787Q 788I 789Y 790K 792P 796D 797F 854K 855F 861L 862P 863P 864L 865L 869M 872Q 873Y 886W 889G 890A 891G 894L 895Q 897P 898F 900M 904Y 914N 917Y 918E 921K 966L 967S 975S 976V 979D 982S 994D 998T 1002Q 1005Q 1012L 1019R 1027T 1030S 1031E 1034L 1035G 1038K 1144E 1145L (identity: 100.0 %/94.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zgh_B_1 identity=94.9% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* **************************************: 6zgh_B_1 45:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 144 SecStr : EEEE SS B S S SB EEEEEE TT EEEEE ----- EE S EEEEEEESS EEEEESS SSS: ExpBur :eeeebeeeeeeeeeebebeebbbbeebeeeeeeeeeeeeeebbbbeeebebbebeee-----eebbbbeebebeebbbbbbbbbbebbbbbbbbeeeeee: Contact : b bbbbb b queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6zgh_B_1 145:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 244 SecStr :S EEEEEE SS EEEEEEEEEEEEEEEEEEEE SSS EEEEEEEEEEEEEEEEEEEE SSB EEEEEEEEEETTEEEEEEEEE BS: ExpBur :eebbbbbebbeebbbbbbebebbebbbbbbebeeeeeeeeeebebbeeeeeeeeeeeeeeeeeeebeeeeeebeebbbbbbbeeeeebebbbbeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :****************************************************************************************************: 6zgh_B_1 245:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 344 SecStr :SS BEEEEEE S EEEEEEEEEE TT S TTTS B EEEEEEE EEEEEEEEE TTSSEEEEEESSS HHHHHHHHHTSS SEEE: ExpBur :eebbeeeebbeeeeebebebebeebbbbbbbbbeeeeeeeeeeebebbbbbbbbbebeeeebbbebbeebebeebbbbeeeebbebbbeeeeeebeebee: Contact : b b queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6zgh_B_1 345:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 444 SecStr :E B EEEE B TTTSS S STT EEEEE SSB SGGGSSSS SEEEEESS TTSTTTS EEEEEEEEEEEEGGGTTT SSS: ExpBur :ebeebeeeeeeebebbbebeeebeeeebbebeebbbbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbeeebeebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6zgh_B_1 445:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 544 SecStr : SSHHHHT TT EEEEEEE TTTS TT B S EEE SS SS TTS SS STT SEEE B TTS TTSSEEEEEEE: ExpBur :eeeebbeebbebbeebebbbbbbebbeebeeeebbeebebbeebeeebeeeeeeeeeeeeebeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 6zgh_B_1 545:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 644 SecStr :EEEES S S S SSEEEEEETTEEEEEEEEE S TT EE TT EEE TTT EEEEE SB EEEEE TTT EEEET: ExpBur :bbeeeeeeeebbbeeebeeebeeebbebbbbbeeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeebbebeebeebbbbbbbbbeeeeeeebebbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :**** ******************************************** *************************: 6zgh_B_1 645:DVNCXXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 744 SecStr :T --------------- S S EEEETTEEEES EE S EE SSS EEES ------------ EEE S SSEEE: ExpBur :ebee---------------eebeeeeeeeeeeebbbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6zgh_B_1 745:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 844 SecStr :EE EEEEEEEEEEE EE HHHHH SS SHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHT S S SSS SSSS TTSSS: ExpBur :beeebebebeeebbbbbbebbebebeebbbeebeebeeebeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeeeebeebebeebbeeeeeeb: Contact : b bb bb bb bb b b bbbbb b bb queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************* ******************************************************************: 6zgh_B_1 845:KRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 944 SecStr :S HHHHHHHTT --------------------- HHHHHHTTT EE SS HHHHHHHHHHHHHHHHHHTTSGGGSS HHHHHHHHHHHHT S: ExpBur :ebbebbbebeeee---------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeeeebee: Contact : bb bbbbb b bb b bbb bb bb b b queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :*************************** ****************************************** **************************: 6zgh_B_1 945:NVLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1044 SecStr :HHHHHSHHHHHHHHHHHHHHHHHHHT --- HHHHHHHHHHHHHHHHHHHHTT SSSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeebeebbebbeebbeebeeebee---ebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebee: Contact :b bb b bb bb b b b b b b b queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6zgh_B_1 1045:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1144 SecStr :HHHHHHHHHHHHHHHHHHTTSS TTTSSSSEE EEETTEEEEEEEEEEE EEEEE S EESSSEEEEESS EEE SSSS EEE SSS B: ExpBur :bbeebeeebeebbebbeebbebebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeebbbbeeeebebbbebbebee: Contact : b b bb bb b queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146 :*********************************: 6zgh_B_1 1145:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1177 SecStr : SSSEEEEEETTS SS EE THHHHH : ExpBur :ebbeeebeeeeebeeeeeeeebebeeeeeeeee: Contact : bb |