Protein Model on 6zgh_B_1_A_1 (TEMPLATE: 6zgh )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) B 1 (B) polymer(polypeptide(L)) [1077 aa] Spike glycoprotein :SPIKE_SARS2
2 b A 1 (A) polymer(polypeptide(L)) [875 aa] Spike glycoprotein :SPIKE_SARS2 38Y 41K 42V 43F 44R 45S 47V 225P 281E 737D 739T 740M 744G 745D 755Q 756Y 758S 759F 762Q 765R 786K 787Q 788I 789Y 790K 792P 796D 797F 854K 855F 861L 862P 863P 864L 865L 869M 872Q 873Y 886W 889G 890A 891G 894L 895Q 897P 898F 900M 904Y 914N 917Y 918E 921K 966L 967S 975S 976V 979D 982S 994D 998T 1002Q 1005Q 1012L 1019R 1027T 1030S 1031E 1034L 1035G 1038K 1144E 1145L (identity: 100.0 %/94.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zgh_B_1 identity=94.9%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :*********************************************************     **************************************:
6zgh_B_1      45:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 144
SecStr          :             EEEE SS   B  S S   SB  EEEEEE  TT EEEEE     -----        EE  S EEEEEEESS    EEEEESS SSS:    
ExpBur          :eeeebeeeeeeeeeebebeebbbbeebeeeeeeeeeeeeeebbbbeeebebbebeee-----eebbbbeebebeebbbbbbbbbbebbbbbbbbeeeeee:    
Contact         :                        b  bbbbb b                                                                  

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
6zgh_B_1     145:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 244
SecStr          :S EEEEEE SS EEEEEEEEEEEEEEEEEEEE SSS  EEEEEEEEEEEEEEEEEEEE            SSB EEEEEEEEEETTEEEEEEEEE   BS:    
ExpBur          :eebbbbbebbeebbbbbbebebbebbbbbbebeeeeeeeeeebebbeeeeeeeeeeeeeeeeeeebeeeeeebeebbbbbbbeeeeebebbbbeeebeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :****************************************************************************************************:
6zgh_B_1     245:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 344
SecStr          :SS       BEEEEEE   S   EEEEEEEEEE TT  S TTTS B   EEEEEEE EEEEEEEEE TTSSEEEEEESSS HHHHHHHHHTSS   SEEE:    
ExpBur          :eebbeeeebbeeeeebebebebeebbbbbbbbbeeeeeeeeeeebebbbbbbbbbebeeeebbbebbeebebeebbbbeeeebbebbbeeeeeebeebee:    
Contact         :           b                                                       b                                

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
6zgh_B_1     345:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 444
SecStr          :E    B     EEEE      B   TTTSS S    STT EEEEE SSB  SGGGSSSS  SEEEEESS TTSTTTS EEEEEEEEEEEEGGGTTT SSS:    
ExpBur          :ebeebeeeeeeebebbbebeeebeeeebbebeebbbbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbeeebeebbbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
6zgh_B_1     445:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 544
SecStr          :  SSHHHHT    TT  EEEEEEE TTTS  TT B S EEE   SS   SS           TTS  SS  STT   SEEE  B TTS TTSSEEEEEEE:    
ExpBur          :eeeebbeebbebbeebebbbbbbebbeebeeeebbeebebbeebeeebeeeeeeeeeeeeebeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
6zgh_B_1     545:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 644
SecStr          :EEEES S  S   S        SSEEEEEETTEEEEEEEEE  S   TT  EE  TT    EEE TTT  EEEEE SB   EEEEE  TTT    EEEET:    
ExpBur          :bbeeeeeeeebbbeeebeeebeeebbebbbbbeeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeebbebeebeebbbbbbbbbeeeeeeebebbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :****               ********************************************            *************************:
6zgh_B_1     645:DVNCXXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 744
SecStr          :T   ---------------   S   S EEEETTEEEES EE S      EE SSS EEES  ------------    EEE    S        SSEEE:    
ExpBur          :ebee---------------eebeeeeeeeeeeebbbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
6zgh_B_1     745:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 844
SecStr          :EE  EEEEEEEEEEE     EE  HHHHH SS SHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHT   S      S   SSS   SSSS  TTSSS:    
ExpBur          :beeebebebeeebbbbbbebbebebeebbbeebeebeeebeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeeeebeebebeebbeeeeeeb:    
Contact         :                       b bb   bb         bb bb  b  b                    bbbbb b   bb                

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :*************                     ******************************************************************:
6zgh_B_1     845:KRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 944
SecStr          :S  HHHHHHHTT --------------------- HHHHHHTTT EE   SS HHHHHHHHHHHHHHHHHHTTSGGGSS     HHHHHHHHHHHHT  S:    
ExpBur          :ebbebbbebeeee---------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeeeebee:    
Contact         :                                        bb     bbbbb   b  bb            b  bbb  bb bb b   b         

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :***************************   ******************************************  **************************:
6zgh_B_1     945:NVLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1044
SecStr          :HHHHHSHHHHHHHHHHHHHHHHHHHT ---  HHHHHHHHHHHHHHHHHHHHTT  SSSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeebeebbebbeebbeebeeebee---ebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebee:    
Contact         :b  bb  b                                            bb       bb  b  b           b   b   b  b      b 

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
6zgh_B_1    1045:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1144
SecStr          :HHHHHHHHHHHHHHHHHHTTSS    TTTSSSSEE     EEETTEEEEEEEEEEE  EEEEE  S EESSSEEEEESS EEE SSSS EEE SSS   B:    
ExpBur          :bbeebeeebeebbebbeebbebebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeebbbbeeeebebbbebbebee:    
Contact         :     b       b  bb  bb  b                                                                           

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146
                :*********************************:
6zgh_B_1    1145:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1177
SecStr          :   SSSEEEEEETTS SS EE     THHHHH :    
ExpBur          :ebbeeebeeeeebeeeeeeeebebeeeeeeeee:    
Contact         :                              bb                                                                    


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