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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1032 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | W 1 (B) | non-polymer(EIC) | LINOLEIC ACID | 338F 358I 365Y 369Y 374F 377F 387L 392F 395V (identity: 100.0 %/91.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zb5_B_1 identity=91.7% |
queryA 15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 :**** ******************************************* **************************************: 6zb5_B_1 15:CVNLXXXXXXPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAXXXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114 SecStr : ------ EEEE S EE S SEEEEEEEEE TTEEEEEE --------- EE SS EEEEEE SS EEEEEEESS STTS: ExpBur :eeee------eeeeeebeebbbbbeeeeeeeeeeeebeebbbbbeeebeebeb---------eeeebeebebeebbbbbbebeeebbebbbbbeebeeee: queryA 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214 :***************************** ***************** ************************ : 6zb5_B_1 115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXXXXXEFRVYSSANNCTFEYVSXXXXXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPIXXXX: 214 SecStr : BEEEEE SS EE B EEEEEEEEEE ------------ EEEEEE -------------- EEEEEEETTEEEEEEE ----: ExpBur :ebbbbbeeeeeebbebbebebbeebbbbe------------eeebeeeeeeeeeeeee--------------eebebbbbbeeeeebebbeeebee----: queryA 215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 : ******************************* **********************************************************: 6zb5_B_1 215:XLPQGFSALEPLVDLPIGINITRFQTLLALHRXXXXXXXXXXGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314 SecStr :- S EEEEEEEEE EEEEEEEEB ---------- B EEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEE: ExpBur :-eeeeeebbeeeeebebebebeebbbbbbbee----------eeeeeebbbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeeeebeebeee: queryA 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 :****************************************************************************************************: 6zb5_B_1 315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414 SecStr :E EEEEE B HHHHHS S BGGG EEEEE S B GGGGTTT SEEEESSS GGGTTS EESSEEEEEEEEEGGGGGG SSS : ExpBur :beebeeeeeeebbbbeeeeeebebeebbeeeebbbbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbeee: Contact : b b b b b b b b b queryA 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 :****************************************************************************************************: 6zb5_B_1 415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514 SecStr : SHHHHHT SS EEEEEEE TTTS TT EEE SS TT EE SSS S SSSEE SEEE TTS TTSSEEEEEEEE: ExpBur :eeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbeb: queryA 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 :****************************************************************************************************: 6zb5_B_1 515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614 SecStr : BSSS EE S SS EEEEETTEEEEEEEEE TT EEE TTS EEEEE TTT EEEEE S EEEEE TTT EEEETT: ExpBur :bebeeeebebbbeeeeeeebeeebbebbbbbeeeebebeeeeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbee: queryA 615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714 :**** ******************************************** *************************: 6zb5_B_1 615:VNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQXXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAI: 714 SecStr : ------------- S S S B SS EEES EE S SEEEETTEEEEE -------------- EEEEE SSEEEE: ExpBur :bebe-------------eeebeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbbee--------------eebbbbeeeeeeeeeeeeeeeeeeb: queryA 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 :****************************************************************************************************: 6zb5_B_1 715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814 SecStr :ES EEEEEEEEEEE EEE HHHHHTTT HHHHHHTTTT HHHHHHHHHHHHHHHHHHHHHHHHH S S SS TTTS TTSSS : ExpBur :beebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeeeeeeeeeebebeebbeeeebebe: queryA 815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 :************** ************ *******************************************************************: 6zb5_B_1 815:RSFIEDLLFNKVTLXXXGFIKQYGDCLGDXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914 SecStr : HHHHHHHTTS --- HHHHS ---- HHHHHHTTTEEE SS HHHHHHHHHHHHHHHHHHSSSTTSSS HHHHHHHHHHTTT HH: ExpBur :bbebbebbeeebee---eeeeeeeebeee----eeebebeeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeeeebbebbbebbeebebeee: queryA 915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 :************************** ***********************************************************************: 6zb5_B_1 915:VLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014 SecStr :HHHHSHHHHHHHHHHHHHHHHHHHT --- HHHHHHHHHHHHHHHHHHGGG SSSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbeeeeeebbeebeebbeebbeebee---ebeebbebbeebeebbbebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeee: queryA 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 :****************************************************************************************************: 6zb5_B_1 1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114 SecStr :HHHHHHHHHHHHHHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSS EEE SSSEEEESSS EEEEETTEEEEEE: ExpBur :beebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebebbbeeeebebbbeebeeeee: queryA 1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139 :*************************: 6zb5_B_1 1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139 SecStr : BSSS EE S TTS TT EE B : ExpBur :beeeebeeeeeeeeeeeeeeeebee: |