Protein Model on 6zb4_A_1_D_1 (TEMPLATE: 6zb4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (C) polymer(polypeptide(L)) [1035 aa] Spike glycoprotein :SPIKE_SARS2
2 b D 1 (D) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 717N 922L 926Q (identity: 100.0 %/92.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zb4_A_1 identity=92.0%
queryA        15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
                :****     ********************************************         **************************************:
6zb4_A_1      15:CVNLXXXXXLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAXXXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
SecStr          :    -----    EEEE S  EE  SS    S EEEEEEEE  SSEEEEEE  ---------      EEE SS EEEEE BSS  EEEEEEESS STTS:    
ExpBur          :eeee-----eeeeeeebeebbbbbeeeeeeeeeeeebeebbbbbebebeebeb---------eebebeebebeebbbbbbebeeebbebbbbbeebbeee:    

queryA       115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214
                :*****************************            *****************              ************************    :
6zb4_A_1     115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXXXXXEFRVYSSANNCTFEYVSXXXXXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPIXXXX: 214
SecStr          : BEEEB  TT  B   B   EEEEEEEE ------------ EEEES           -------------- B  EEEEEEETTEEEEEEE  B ----:    
ExpBur          :ebbbbbeeeeeebbebbbbebbeebbbee------------eeebeeeeeeeebeeee--------------eebebebbbeeeeebebbeeeeee----:    

queryA       215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
                : *******************************         ***********************************************************:
6zb4_A_1     215:XLPQGFSALEPLVDLPIGINITRFQTLLALHRXXXXXXXXXSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
SecStr          :-      EEEEEEEE       EEEEEEEE  ---------         EEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS   SEEEE:    
ExpBur          :-eeeeeebbeeeeebebebebeebbbbbbbee---------eeeeeebebbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeebebeebeee:    

queryA       315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
                :****************************************************************************************************:
6zb4_A_1     315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
SecStr          :          EEEE      B  HHHHHT S   BGGG EEEEE S B  GGGGGGT   SEEEESSS GGGTTS EESSEEEEEEEEEGGGGGGSSSS :    
ExpBur          :beebeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbeee:    

queryA       415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
                :****************************************************************************************************:
6zb4_A_1     415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
SecStr          : SHHHHTT    SS  EEEEEEE TTTS  TT     EEE   SS   TT        EE SSS  SS  SSSEE SEEE    TTS TTSSEEEEEEEE:    
ExpBur          :eeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeebeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbeb:    

queryA       515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
                :****************************************************************************************************:
6zb4_A_1     515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
SecStr          :  BSSS   EE S        SS EEEEETTEEEEEEEEE      TT  EEE TTS EEEEE TTT  EEEEE S    EEEEE  TTT    EEEETT:    
ExpBur          :bebeeeebebbbeeeeeeeeeeebbebbbbbeeeebbbeeeeeeeeeeebbbeeeeeeeebbbbeeeeebbebeebeeebbbbbbbbbeebeeebbbbee:    

queryA       615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714
                :****             ********************************************             **************************:
6zb4_A_1     615:VNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQXXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAI: 714
SecStr          :    -------------  SSS   S B   SS EEES EE SS B  SEEEETTEEEEE -------------   EEEEEB           TTEEE :    
ExpBur          :bebe-------------eeebeeeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbee-------------eeebbbbeeeeeeeeeeeeeeeeeeb:    

queryA       715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814
                :****************************************************************************************************:
6zb4_A_1     715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814
SecStr          : S EEEEEEEEEEE     EEE HHHHHTTT SHHHHHHTTT SSHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS   SS   TTTS  TTSSS :    
ExpBur          :beebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeeeeebebeebbeeeebebe:    
Contact         :  b                                                                                                 

queryA       815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
                :**************   ************    *******************************************************************:
6zb4_A_1     815:RSFIEDLLFNKVTLXXXGFIKQYGDCLGDXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
SecStr          :  HHHHHHHTSS  ---     HHHHS  ----  TTTTTTTTEEE   SS HHHHHHHHHHHHHHHHHHGGGGGSSS     HHHHHHHHHHHTT  SH:    
ExpBur          :bbebbebbeeebee---eeeeeeeebeee----eeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeee:    

queryA       915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
                :**************************   ***********************************************************************:
6zb4_A_1     915:VLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
SecStr          :HHHHSHHHHHHHHHHHHHHHHHHHT ---  HHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHTTTS TTTTHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeeeeeebbeebeebbeebbeebee---ebeebbebbeebeebbbebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeee:    
Contact         :       b   b                                                                                        

queryA      1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
                :****************************************************************************************************:
6zb4_A_1    1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
SecStr          :HHHHHHHHHHHHHHHHHTTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE    EEEE S BBSSSEEEE SSSEEEESSSSEEEE SSS   B :    
ExpBur          :beebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbbeeeebebbbeebeeeee:    

queryA      1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139
                :*************************:
6zb4_A_1    1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139
SecStr          :  TTS EEEEETTS TT  B     :    
ExpBur          :beeebbeeeeeeeeeeeeeeeebee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123