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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1107 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | X 1 (JA) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 616N 618T 644Q 645T (identity: 100.0 %/96.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xr8_B_1 identity=96.3% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 6xr8_B_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEESS B SSS SEEEEEEEEE TTEEEEEEEEE ------- EE EE S EEEEEEESSS EEEEEEESSSBSS: ExpBur :eeeebeeeeeeeeeebebebbbbbbbeeeeeeeeeeebeebbbbbeeebebbebee-------ebbbbeebebeebbbbbbbbbbebbbbbbbbbebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6xr8_B_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEEEEEEEEEEEEEEE SSSS EEEEEEEEEEEEEEEEEEE SS EEEEEEEEEETTEEEEEEEEEE S: ExpBur :eebbbbbebbebebbbbbebebbebbbbbbeeeeeeeeeeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebebbbeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :******************************* ************************************************************: 6xr8_B_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALXXXXXXXXXSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS BEEEEEE EEEEEEB --------- S SEEEEEEE EEEEEEEEE TT EEEEEETTSSHHHHHHHHHT S SEEE: ExpBur :eebbeeeebbeeeeebebebebeebbbbbbb---------eeeebebeebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeeeee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6xr8_B_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EE EEEEE SB HHHHSS S BGGG EEEEE SEE GGGGTTT SEEEESSS GGGGGG EESSEEEEEEEEEGGGGGGGSTT: ExpBur :ebeebeeeeeeebbbbbeeeeebebeebbeeeebebbbebeeeebeebbbeeeebeeebeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbeee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6xr8_B_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT TT EEEEEEE HHHH SS BTT EEE SS TT EE SSS SS BTTEE SEEE B TTS TTSSEEEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebbbeeebeebebbbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 6xr8_B_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EE SSS SEE S SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE SSS EEEEE S EEEEE TTT S EEEET: ExpBur :bbebeeeebebbbeeeeeebeeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :***** ******************************************** *************************: 6xr8_B_1 614:DVNCTXXXXXXXXXXXXXXWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T -------------- SSS SSEEEETTEEEES EE SS SEEEETTEEEEEE ------------ EEEEEE TTEEE: ExpBur :ebebe--------------eebeeeeeeebebeebbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee: Contact : b b bb queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6xr8_B_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EES EEEEEEEEEEE EEEE HHHHHTTT HHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT SS SS STT TTTSB TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeeebeeeeeebeebeebbeebbebbeebbeebbbebeeebeeeeeeebeebebebbbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 6xr8_B_1 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : BHHHHHHHHHS S SS STTTSTHHHHH HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT T: ExpBur :ebbebbebbbeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 6xr8_B_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHTTHHHHHHHHHHHHHHHHHHHHH TTTTHHHHHHHHHHHHHHHHHHHGGG TTSS SSHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbbebbeebeeeeeebeebbebbeebeebbbebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbbebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6xr8_B_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEE EEEEE S EESSSEEEEESSSEEEE SS EEEE TTS E: ExpBur :bbeebeebbeebbebbeebbbbbbeeeebbeeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162 :*************************************************: 6xr8_B_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSP:1162 SecStr :E BTTTEEEEEETTSSTT EE B THHHHHHHHHHHHHHHHHHHH : ExpBur :ebbeeebeeeeeeeeeeeeeeeebeeeeeeeeeeeeeeeeeeeeeeeee: |