Protein Model on 6xm4_A_1_X_1 (TEMPLATE: 6xm4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1037 aa] Spike glycoprotein :SPIKE_SARS2
2 b X 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 280N 281E 282N (identity: 100.0 %/92.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xm4_A_1 identity=92.3%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6xm4_A_1      14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113
SecStr          : EEE SS   B  SS    S EEEEEEEE  TT EEEEE    ----------    EE SS EEEEE  SS    EEEEESS BSSS  EEEEE SS E:    
ExpBur          :eebebbbbbbbbeeeeeeeeeeeebeebbbbbeeebeebeeee----------eeeebebeebbbbbbbbeeeebebbbbbbebeeeeebbbbbeeeeee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************               ***************            *****************************************:
6xm4_A_1     114:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXVYSSANNCTFEYVSQXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213
SecStr          :EEE    B  SS  EE ---------------      S   EEEE ------------   EEEEEEEEETTEEEEEEEEE    SSS  SS   BEEE:    
ExpBur          :ebbbbbbebeeebbbee---------------eeeeeeeeebeeeee------------eeebebbbbbeeeeebebbbeeeebeeeeebbeeeebbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :************************             ***************************************************************:
6xm4_A_1     214:VDLPIGINITRFQTLLALHRSYLTXXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313
SecStr          :EEE       EEEEE EESS    ------------- EEE   EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS   SEEEEE        EE :    
ExpBur          :eebebebebeebbbbbbeeeeeee-------------ebbbbebeebbbbbebbeebebeebbbbbbebbbbbbbeeeebebeeeeeebeeebeeeeeeb:    
Contact         :                                                     bbb                                            

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6xm4_A_1     314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413
SecStr          : B     B   HHHHTT S   BTTB EEEEE SEE  THHHHSSS  SEEEESSS STTTTS B S EEEEEEEEETTSGGGSSTT  SHHHHHT    :    
ExpBur          :bbbeebeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbebebeebbbeeeeeebbeebbbbb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :******************  ********************************************************************************:
6xm4_A_1     414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513
SecStr          :TT  EEEEEEE SSSS  -- B         SS   TT        EE SS   SSS  TTEE S     B SSS TTSSEEEEEEEEE  SSS   EE :    
ExpBur          :eebebbbbbbebeeebbe--ebeebbbbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbbbbeeeeeeebbbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :****************************************************************************************************:
6xm4_A_1     514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613
SecStr          :S       SSS EE EETTEE  BEEEE      SS  EEE TTS EEEEE TTT  EEEEE      EEEEE  TTT    EEEEET  TTSHHHHTTG:    
ExpBur          :eeeeeeeeeeebbebbbebeeeebbbeeeeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeeeebbbbbbbeeebeebbbbbeebebeebeeebbb:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :**************************************************            **************************************:
6xm4_A_1     614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :GGS TTTGGGTSSS EEE SSEEEESSEE S     SEEEETTEEEEEE ------------  EEEEEE            TTEEEEEEEEEEEEEEEE:    
ExpBur          :eebbeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbbebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6xm4_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE    EEEE HHHHHSTT STTHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TTSSSS  HHHHHHHHHS:    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeeeebebbebbbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**                    ******************************************************************************:
6xm4_A_1     814:TLXXXXXXXXXXXXXXXXXXXXLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          :  -------------------- HHHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHHTTSTTSSS     HHHHHHHHHHTTT  THHHHTTHHHHHHH:    
ExpBur          :ee--------------------eeeebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
6xm4_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHSSS    HHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebbebeeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6xm4_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SS EEEE SSS   B  BTTSEEE S T:    
ExpBur          :ebbeebbbebbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebeeeeebbeeebeeeeeb:    

queryA      1127:DVVIGIVNNTVYDPLQPELDS:1147
                :*********************:
6xm4_A_1    1114:DVVIGIVNNTVYDPLQPELDS:1134
SecStr          :TSSTT EE   B SSSSS   :    
ExpBur          :eeeeeeeeeebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123