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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1037 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | X 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 280N 281E 282N (identity: 100.0 %/92.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xm4_A_1 identity=92.3% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xm4_A_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE SS B SS S EEEEEEEE TT EEEEE ---------- EE SS EEEEE SS EEEEESS BSSS EEEEE SS E: ExpBur :eebebbbbbbbbeeeeeeeeeeeebeebbbbbeeebeebeeee----------eeeebebeebbbbbbbbeeeebebbbbbbebeeeeebbbbbeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** *************** *****************************************: 6xm4_A_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXVYSSANNCTFEYVSQXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE B SS EE --------------- S EEEE ------------ EEEEEEEEETTEEEEEEEEE SSS SS BEEE: ExpBur :ebbbbbbebeeebbbee---------------eeeeeeeeebeeeee------------eeebebbbbbeeeeebebbbeeeebeeeeebbeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************ ***************************************************************: 6xm4_A_1 214:VDLPIGINITRFQTLLALHRSYLTXXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEE EEEEE EESS ------------- EEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS SEEEEE EE : ExpBur :eebebebebeebbbbbbeeeeeee-------------ebbbbebeebbbbbebbeebebeebbbbbbebbbbbbbeeeebebeeeeeebeeebeeeeeeb: Contact : bbb queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xm4_A_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B B HHHHTT S BTTB EEEEE SEE THHHHSSS SEEEESSS STTTTS B S EEEEEEEEETTSGGGSSTT SHHHHHT : ExpBur :bbbeebeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbebebeebbbeeeeeebbeebbbbb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************** ********************************************************************************: 6xm4_A_1 414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :TT EEEEEEE SSSS -- B SS TT EE SS SSS TTEE S B SSS TTSSEEEEEEEEE SSS EE : ExpBur :eebebbbbbbebeeebbe--ebeebbbbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbbbbeeeeeeebbbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6xm4_A_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr :S SSS EE EETTEE BEEEE SS EEE TTS EEEEE TTT EEEEE EEEEE TTT EEEEET TTSHHHHTTG: ExpBur :eeeeeeeeeeebbebbbebeeeebbbeeeeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeeeebbbbbbbeeebeebbbbbeebebeebeeebbb: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6xm4_A_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :GGS TTTGGGTSSS EEE SSEEEESSEE S SEEEETTEEEEEE ------------ EEEEEE TTEEEEEEEEEEEEEEEE: ExpBur :eebbeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbbebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xm4_A_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHSTT STTHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSSS HHHHHHHHHS: ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeeeebebbebbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** ******************************************************************************: 6xm4_A_1 814:TLXXXXXXXXXXXXXXXXXXXXLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : -------------------- HHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTSTTSSS HHHHHHHHHHTTT THHHHTTHHHHHHH: ExpBur :ee--------------------eeeebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xm4_A_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHSSS HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbebeeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xm4_A_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SS EEEE SSS B BTTSEEE S T: ExpBur :ebbeebbbebbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebeeeeebbeeebeeeeeb: queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6xm4_A_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :TSSTT EE B SSSSS : ExpBur :eeeeeeeeeebeeeeeeeeee: |