CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1047 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | OA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 331N 580Q (identity: 100.0 %/93.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xm3_C_1 identity=93.2% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xm3_C_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EE SS B SS S EEEEEEEE SS EEEE ---------- EE SS EEEEE SS EEEEE SS SSSS EEEE SS E: ExpBur :eebebbbbbbbbeeeeebeeeeeebeebbbbbeeebeebeeee----------eeeebebeebbbbbbbbeeeebebbbbbeeeeeeeebbbbbeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ************** *****************************************: 6xm3_C_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEEES SS --------------- S EEEE ------------- EEEEEEEEETTEEEEEEEEE SSSS S BEEE: ExpBur :ebbbbbbeeeeebbbee---------------eeebeeeeeeeeee-------------eeebebbbbbeeeeebbbbbeeeebeeeeebbeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************* ***************************************************************: 6xm3_C_1 214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEE EEEEEE SS ------------ EEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHTTSS SEEEEEEEEE : ExpBur :eebebebebeebbbbbeeeeeeeee------------ebbbbebeeeebbbebeeebebeebbbbebbbbbbbbbeeeeeebeebeeebeebebeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xm3_C_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B THHHHS S BGGG EEEEE S B THHHHS SS SEEEESSS GGGGGG EEEEEEEEEEE STTGGGSSSS SSHHHHT : ExpBur :bbbeeeeeebebeebbeeeebebbeebeeeebeebebebeebeeeeebebbebeebeeeebbeebbbebebbbbbbebebeebbbeeeeeebbbebbbbb: Contact : b queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************** ********************************************************************************: 6xm3_C_1 414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SS SEEEEEE STTT -- B EEE SS TT EE SS SS STTEE SEEE B TTS TTSS EEEEEEEEEESSS BB : ExpBur :eebebbbbbbebeeebbe--beeebeebeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbebbbbeeeeeebebbbbbbbbbbeeeeeeeebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6xm3_C_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr :S SSEEEEEETTEEEEEEEEE TT EE TTS EEEEE SSS EEEEE EEEEEEEES TTT S EEEEET TTSHHHHTTG: ExpBur :eeeeeebeeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeebbbbbeebeeeebeebbeb: Contact : b queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6xm3_C_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :GGS HHHHSTT SS EEE SSEEEES EE S SEEEETTEEEEEE ------------ EEEEEE SSEEEEEEEEEEEEEEEE: ExpBur :eeebeebeeebeeeeebebebbbbbebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xm3_C_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHSTT TTTTTTGGGG SSSHHHHHHHHHHHHHHHHHHHHHT SS S STT TTTS SSSSS SHHHHHHTT : ExpBur :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeeeebeebebeebbeeeeeeeebbebbbbbbebb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :************** ****************************************************************************: 6xm3_C_1 814:TLADAGFIKQYGDCXXXXXXXXXXCAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : S SSHHHHT ---------- STTEEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHTTTT THHHHHTHHHHHHH: ExpBur :ebeeebbbeebeee----------eeeeeebbebeeeebeeeebbeebebbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xm3_C_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHSSS S HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS GGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebbeebeeeeeebeebbebbeebbebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xm3_C_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEESSS EEEE TTS B BTTTEEE S T: ExpBur :ebbeebbbbbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbeeeeebbeeebeeeeeb: queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6xm3_C_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :TSSTT EE B SSSSS : ExpBur :eeeeeeeeeebeeeeeeeeee: |