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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | B 1 (B) | polymer(polypeptide(L)) [1034 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | S 1 (S) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 483V (identity: 100.0 %/92.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xey_B_1 identity=92.1% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :*********************************************** **********************************************: 6xey_B_1 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTXXXXXXXNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 SecStr : EEE S B SS S EEEEEEEE TT EEEEEE S SS ------- EE SS EEEEE TTSEEEEEEESSTTSSS EEEEEE SS E: ExpBur :eebebbebbbbbbeeeeeeeeeeebebebbbbeeebeebebbbeeee-------eeebebeebbbbbbebeeebbbbbbbbbebeeeeebbbbbbeeeeb: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ******************* ****************************************: 6xey_B_1 127:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXRVYSSANNCTFEYVSQPFLXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 SecStr :EEEEE B SS S -------------- SB EEEEEEES ---------- EEEEEEEEEETTEEEEEEEEEE S SSS SS BEEE: ExpBur :ebebbbbbbbebbbbbe--------------eebbeeeeeeeeeeeeebe----------eebbbbbbbeeeeebbbbbbeeebeeeeebbeeebbbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :****************************************************************************************************: 6xey_B_1 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 SecStr :EEE EEEEEE TTS TT S S EEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT SS SEEEEEEEEE B : ExpBur :bebebebebeebbbbbbbeebebeeebeeeeeebeebbbbbbebeeeebbbebeeebebebbbbbeeeebbebbbeeeebebeebeeebeeeeeeeebeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xey_B_1 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 SecStr : B S B SHHHHT SS BSTT EEEEE SEE HHHHT TT SB EESS GGGGGG EES EEEEEEEEEGGGTTTSSTT SHHHHHT : ExpBur :ebbeeeeeebebeebbeeeebebbbebeebebeebbbebeebbeeeebeeeebeebeeebbbeebbbebebbbbbbebebeebbbeeeeebbbbebbebe: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6xey_B_1 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 SecStr :TT EEEEEEE TTTS TT EEE SS TT EESS S SS BTTEE SEEE TTS TTTSEEEEEEEEE SS SEE : ExpBur :eebebbbbbbebbeebeeeebbeebebbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbbeeebebbbbb: Contact : b queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 6xey_B_1 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 626 SecStr : SS EEEEETTEEEEEEEEE TT EEE STT EEEEE TTT EEEEEE EEEEEEEES TTT S EEEEET GGG ------: ExpBur :eeeeeeeeeebbbebebbebeeebebeeeeeebeeeeebeeeeeeeeebbbbeeeeebbebeebeebebbbbbbbeeeeeebbbbebebebeee------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : *************************************** *************************************: 6xey_B_1 627:XXXXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 SecStr :----------- S EEE SSEEEES EE SS B SS BTTB EEE ------------- EEEE BB S SSEE EEEEEEEEEEEE: ExpBur :-----------eeeeeeebeebbbbbbeeeeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xey_B_1 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 SecStr :EE EEEE HHHHHT S STTHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS SS BTTB TTTSB SS SSS BHHHHHHHHH : ExpBur :bbbbbebbbbebeebbbeebeebbeebeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbebeebeeebbebbebbeeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** *************************************************************************: 6xey_B_1 827:TLXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 SecStr : ------------------------- SSEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHH: ExpBur :ee-------------------------eeebbeeeeeebeebebbeebebbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xey_B_1 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 SecStr :HHHHHHHHHHHHTT GGGGHHHHHHHHHHHHHHHHHHHHHT TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebbeebeeeeeebeebeebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeeebebbbebbbebbeebbeebeebbeebbebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xey_B_1 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 SecStr :HHHHHHTTS TTTSSSSEEEEEEEEE SSEEEEEEEEEEEEEE EEB S EEETTEEEEESSSEEE TTT EEE TTS B SSSEEE S T: ExpBur :ebbeebbbbebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebebbbebbeeeeebbeebbeeeeee: queryA 1127:DVVIGIVNNTVYDPLQPELD:1146 :********************: 6xey_B_1 1127:DVVIGIVNNTVYDPLQPELD:1146 SecStr :TSSTT B TTTT : ExpBur :eebeeeeeeebeeeeeeeee: |