Protein Model on 6xey_B_1_S_1 (TEMPLATE: 6xey )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(SPIKE_SARS2) B 1 (B) polymer(polypeptide(L)) [1034 aa] Spike glycoprotein :SPIKE_SARS2
2 b S 1 (S) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 483V (identity: 100.0 %/92.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xey_B_1 identity=92.1%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :***********************************************       **********************************************:
6xey_B_1      27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTXXXXXXXNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
SecStr          : EEE  S   B  SS    S EEEEEEEE  TT EEEEEE S SS  -------   EE SS EEEEE   TTSEEEEEEESSTTSSS EEEEEE SS E:    
ExpBur          :eebebbebbbbbbeeeeeeeeeeebebebbbbeeebeebebbbeeee-------eeebebeebbbbbbebeeebbbbbbbbbebeeeeebbbbbbeeeeb:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************              *******************          ****************************************:
6xey_B_1     127:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXRVYSSANNCTFEYVSQPFLXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
SecStr          :EEEEE   B SS  S  --------------  SB    EEEEEEES   ---------- EEEEEEEEEETTEEEEEEEEEE  S SSS SS   BEEE:    
ExpBur          :ebebbbbbbbebbbbbe--------------eebbeeeeeeeeeeeeebe----------eebbbbbbbeeeeebbbbbbeeebeeeeebbeeebbbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :****************************************************************************************************:
6xey_B_1     227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
SecStr          :EEE       EEEEEE  TTS   TT  S S      EEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT SS  SEEEEEEEEE     B :    
ExpBur          :bebebebebeebbbbbbbeebebeeebeeeeeebeebbbbbbebeeeebbbebeeebebebbbbbeeeebbebbbeeeebebeebeeebeeeeeeeebeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6xey_B_1     327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
SecStr          : B  S   B  SHHHHT SS  BSTT EEEEE SEE   HHHHT TT SB  EESS GGGGGG EES EEEEEEEEEGGGTTTSSTT  SHHHHHT    :    
ExpBur          :ebbeeeeeebebeebbeeeebebbbebeebebeebbbebeebbeeeebeeeebeebeeebbbeebbbebebbbbbbebebeebbbeeeeebbbbebbebe:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6xey_B_1     427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
SecStr          :TT  EEEEEEE TTTS  TT     EEE   SS   TT        EESS S  SS  BTTEE SEEE    TTS TTTSEEEEEEEEE   SS  SEE :    
ExpBur          :eebebbbbbbebbeebeeeebbeebebbeebeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbbeeebebbbbb:    
Contact         :                                                        b                                           

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6xey_B_1     527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 626
SecStr          :         SS EEEEETTEEEEEEEEE      TT  EEE STT EEEEE TTT  EEEEEE  EEEEEEEES TTT S  EEEEET  GGG ------:    
ExpBur          :eeeeeeeeeebbbebebbebeeebebeeeeeebeeeeebeeeeeeeeebbbbeeeeebbebeebeebebbbbbbbeeeeeebbbbebebebeee------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :           ***************************************             *************************************:
6xey_B_1     627:XXXXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
SecStr          :-----------  S EEE SSEEEES EE SS B  SS  BTTB  EEE ------------- EEEE BB  S        SSEE  EEEEEEEEEEEE:    
ExpBur          :-----------eeeeeeebeebbbbbbeeeeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6xey_B_1     727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
SecStr          :EE    EEEE HHHHHT S STTHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS  BTTB  TTTSB SS SSS BHHHHHHHHH :    
ExpBur          :bbbbbebbbbebeebbbeebeebbeebeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebbebeebeeebbebbebbeeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**                         *************************************************************************:
6xey_B_1     827:TLXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
SecStr          :  -------------------------  SSEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHTTT  THHHHHTHHHHHHH:    
ExpBur          :ee-------------------------eeebbeeeeeebeebebbeebebbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
6xey_B_1     927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
SecStr          :HHHHHHHHHHHHTT GGGGHHHHHHHHHHHHHHHHHHHHHT  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebbeebeeeeeebeebeebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeeebebbbebbbebbeebbeebeebbeebbebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6xey_B_1    1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
SecStr          :HHHHHHTTS    TTTSSSSEEEEEEEEE SSEEEEEEEEEEEEEE  EEB S EEETTEEEEESSSEEE TTT  EEE TTS   B   SSSEEE S T:    
ExpBur          :ebbeebbbbebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebebbbebbeeeeebbeebbeeeeee:    

queryA      1127:DVVIGIVNNTVYDPLQPELD:1146
                :********************:
6xey_B_1    1127:DVVIGIVNNTVYDPLQPELD:1146
SecStr          :TSSTT B      TTTT   :    
ExpBur          :eebeeeeeeebeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123