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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1017 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | L 1 (L) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 717N 1071Q (identity: 100.0 %/90.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6x6p_C_1 identity=90.5% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :****************************************** ***********************************************: 6x6p_C_1 13:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIXXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 112 SecStr : EEEE S B SSS S EEEE EE TTEEEEEE ----------- B SS EEEEE SSS EEEEEEESSSSSSS EEEEEE SSSE: ExpBur :eeeebebbbbbbeeeeeeeeeeeebeebbbbbebebeebeee-----------eeeebebeebbbbbbebeeeebbbbbbbeebeeebebbbbbeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ******************** ************************* ***********: 6x6p_C_1 113:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPINXXXXLPQGFSALEPL: 212 SecStr :EEE EE SS B --------- B S SEE S EEE -------------- EEEEEEEEETTEEEEEEEEE ---- BEEE: ExpBur :bbebbbbebbeebbbbe---------eeeeeebeeeeeeeeeeeee--------------ebbbbbbbbeeebebbbbbeebeee----eeeebebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :******************* ****************************************************************: 6x6p_C_1 213:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 312 SecStr :EEE EE EE ----------------- EEE EE EEEEE TTS EEEEEETTS HHHHHHHHTT SS SEEEEEEEEE EEE: ExpBur :eebebebebeebbbbbbee-----------------ebbbbbebeebebbbebeeebebeebbbbbbebbbbbbbeeeeeebeebebebbebebeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6x6p_C_1 313:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 412 SecStr :EE B HHHHS S STT EEEEE SEE HHHHHTT SEEEESSS TTGGGG EESEEEEEEEEE SGGGGGSSTT SHHHHHT : ExpBur :bbbeeeeeebebeebbebeebebbebbeeeebeebbbebeebeeeeebeebebbeeeeeebbeebbbbbebbbbbbbbeebebbbeeeeeebbebbbbbb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :************************************************** ****************************************: 6x6p_C_1 413:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGXXXXXXXXXXNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 512 SecStr :TT SEEEEEE HHHH TT EEE SS TT EE ---------- EE SEEE TTS STTS EEEEEEEEE SS EE : ExpBur :eebebbbbbbebeeebbeeeeeeebebbbebeeebeeeeebeeeeeeeee----------eeeebbeebebeeeeeeeebbbbbbbbbbbeeeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6x6p_C_1 513:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 612 SecStr :S SS EEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET TTHHHHHHTT: ExpBur :eeeeeebeeeebbebbbbbeeeebebeeeeeebeeeebeeeeeeeebebbbbbeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebeebbee: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6x6p_C_1 613:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 712 SecStr :T SS SS S EEETTEEEES EE SS SEEEETTEEEEEE ------------ EEEEEE S TTEEEEES EEEEEEEEE: ExpBur :eebebebeeeeeeeeebebebbbbbebeebeeeeeeebebeeebbbbeee------------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: Contact : b queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6x6p_C_1 713:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 812 SecStr :EE EEE HHHHHTTT HHHHHHHHTTGGGTHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSS HHHHHHHHH : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbeebeeebebeeeeebeebebeebbeeeebebebbebbebbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :* ************************************************************************: 6x6p_C_1 813:TXXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 912 SecStr : --------------------------- SEEE SS HHHHHHHHHHHHHHHHHTTTTTTTSS HHHHHHHHHHTTT THHHHHHHHHHHHH: ExpBur :e---------------------------eebeeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6x6p_C_1 913:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1012 SecStr :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebbeebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6x6p_C_1 1013:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1112 SecStr :HHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EESSS EEEESSSEEEESSSSEEEE SSS EEE BTTTEEE S G: ExpBur :ebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbebbeeeeebbeebbeeeeee: Contact : b queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6x6p_C_1 1113:DVVIGIVNNTVYDPLQPELDS:1133 SecStr :GGSTT EE B THHHHTT : ExpBur :eeeeebeeeebeeeeeeeeee: |