#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7knh_D_1_TA_1

Protein Model on 7knh_D_1_TA_1 (TEMPLATE: 7knh )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (B) polymer(polypeptide(L)) [1031 aa] Spike glycoprotein :SPIKE_SARS2
2 b TA 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 801N 803S (identity: 100.0 %/91.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7knh_D_1 identity=91.5%
queryA        26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125
                :*****************************************            ***********************************************:
7knh_D_1      26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHXXXXXXXXXXXXFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125
SecStr          :  EEEE S   B SSS    S EEEE   B  TTEEEEEE ------------     EE  S EEEEE SS   EEEEEEESS SSSS  EEEEE SS :    
ExpBur          :eeebebebbbbbbbeeeeeeeeebebeebbbbbebebbbee------------eeeeebebeebbbbbbbbeeeebebbbbbeebeeebbbbbebbeeee:    

queryA       126:VVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225
                :****************           *************************        ****************************************:
7knh_D_1     126:VVIKVCEFQFCNDPFLXXXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225
SecStr          :EEEE S     SS   -----------     TT     S     EE     --------     EEEEEEETTEEEEEE     S TTS   S   BEE:    
ExpBur          :bebebbbbeeeeeeeb-----------eeeeeebeeeeeeeeeeeeeeeeee--------eeebbbbbbbeeeeebbbbbeeeebeeeeebbeeebbbee:    

queryA       226:LVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325
                :*********************              *****************************************************************:
7knh_D_1     226:LVDLPIGINITRFQTLLALHRXXXXXXXXXXXXXXGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325
SecStr          :EEEE       EEEEEE    --------------    EEE   B   EEEEE TTS EEEEEESSS HHHHHHHHHT SS  SEEEEEEEEB   SS :    
ExpBur          :eeebeeeeebeebbbbeeeee--------------eebbbbbbebeebebbbebeeebebeebbbbeeeebbbbbbeeeebebeebeeebbebebeeeee:    

queryA       326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425
                :****************************************************************************************************:
7knh_D_1     326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425
SecStr          :EE       B  THHHHT S    STT   B   SSB   HHHHT S BS  EEES  TTTTTTS  S   EEEEEE GGGTTT STT  SSHHHHT   :    
ExpBur          :bebeeeeeeebeeeebbeeeebbbbeebeeeebeebbbebeebeeeeeeeeeeeeeeeeeebbeebebbbebbbbbbebebbeebbeeeeeebbbebbeb:    

queryA       426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525
                :****************************************************************************************************:
7knh_D_1     426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525
SecStr          : TT  EEEEEEE TTTS  TT  TT EEE   SS   SS           SSS   SS  SS    EEE    TTS GGGS EEEEEEE    S  S   :    
ExpBur          :eeebebbbbbbebeeebeeeebbeebbbbeeeeeebeeeeebeeeeeeeeeeeeeeeeeeebbeebeeebebeeeeeeeebbbbbbbbbbeeeeeeeeee:    

queryA       526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625
                :****************************************************************************************************:
7knh_D_1     526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625
SecStr          :S         SSEEEEE SS EEEEEEEE      TT SEEE SSS EEEEEETTTTEEEEEE    EEEEEEES TTT S  EEE SS  TTSSSS B :    
ExpBur          :bbeeeeeeeeeebbebebeebeeebbbeebeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeebbbbbeebebeebeeeee:    

queryA       626:ADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725
                :            ***************************************             ************************************:
7knh_D_1     626:XXXXXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725
SecStr          :------------    EEEETTEEEES EEEEEEE  SEEEETTEEEEE  -------------  EEEEEE   S      BTTEEEEEEEEEEEEE  :    
ExpBur          :------------eeeeeeebebbbbbebeebeeeeeeebebeeebbbbeee-------------eebbbbeebeeeeeeeeeeeeeeebbeebebebeee:    

queryA       726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825
                :****************************************************************************************************:
7knh_D_1     726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825
SecStr          :EEE     EEE SHHHHT S HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH  SSS     SS  BTTB  TTTS  SSS SSS HHHHHHHHH:    
ExpBur          :bbbbbbebbebebeebbbbebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebebeeeeebeebebeebbbeeebeeebbebbebbbee:    
Contact         :                                                                           b b                      

queryA       826:VTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925
                :***                       **************************************************************************:
7knh_D_1     826:VTLXXXXXXXXXXXXXXXXXXXXXXXAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925
SecStr          :S  -----------------------    SSEEE   SS HHHHHHHHHHHHHHHHHTTTGGGTSS     HHHHHHHHHHTTT  THHHHHTHHHHHH:    
ExpBur          :bee-----------------------eeeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbebbebeeebbeeeeeebbe:    

queryA       926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025
                :************************************************************  **************************************:
7knh_D_1     926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025
SecStr          :HHHHHHHHHHHHTTS   TTTHHHHTTHHHHHHHHHHHHHHT  TTSS SSSHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebeebbeebeeebeeebeebeebeebbeebbebbeebeeeeeeeeebebbebeebeeeeeeeebeeebeebbeebbebbeebbeebeeebeebeeebeeb:    

queryA      1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125
                :****************************************************************************************************:
7knh_D_1    1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125
SecStr          :HHHHHHHTTS   STTSSSSSEEEEE  EE SSEEE  EEEEEEEEEEEEE  S EEETTEEEEESSSEEEESSSSEEEE SSS   EE BSTTEEE S :    
ExpBur          :bebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbeeeebbeebbeeeee:    

queryA      1126:CDVVIGIVNNTVYDPLQPELDSFK:1149
                :************************:
7knh_D_1    1126:CDVVIGIVNNTVYDPLQPELDSFK:1149
SecStr          :TTTSSS EE   B THHHHHHH  :    
ExpBur          :eeeeeebeeeebeeeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123