#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | D 1 (B) | polymer(polypeptide(L)) [1033 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | PA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 519H (identity: 100.0 %/91.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7kms_D_1 identity=91.7% |
queryA 26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125 :***************************************** ***********************************************: 7kms_D_1 26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHXXXXXXXXXXXXFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125 SecStr : EEEESS EE SSS S EEEEEEEE TTEEEEEE ------------ EEE SS EEEEE SS EEEEEEESS SSSS EEEEE SS : ExpBur :eeebebeebbbbbbeeeeeeeeeeebeeebbbbeeebbbbe------------eebeebebeebbbbbbbbeeeebebbbbbeebeeeebbbbbbbeeee: queryA 126:VVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225 :**************** ************************* ****************************************: 7kms_D_1 126:VVIKVCEFQFCNDPFLXXXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225 SecStr :EEEE S SS ----------- TT S EEEE S -------- EEEEEEEEEEETTEEEEEEEEEEES TTS S EEEE: ExpBur :bebbbbbbeeeeebeb-----------eeeeeebeebeeeeeeeeeeeeeee--------eeebbbbbbbeeebebeebbeeeebeeeeebbeeebbbee: queryA 226:LVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325 :********************* *****************************************************************: 7kms_D_1 226:LVDLPIGINITRFQTLLALHRXXXXXXXXXXXXXXGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325 SecStr :EEEEE EEEEEE -------------- EEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS SEEEEEEEE SS : ExpBur :eeebebeeebeebbbbbbeee--------------eebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeebeeebbebeeeeeee: queryA 326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425 :****************************************************************************************************: 7kms_D_1 326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425 SecStr :EE S S S HHHHS S GGG EEE SSB SHHHHTTS S EEESS SGGGTTS B EEEEEEESGGGTTSSTT SSHHHHT B : ExpBur :bebeeeeeeebeeeebbeeeebebbebbeeeebeebebebeebeeeeeeeeeebbebeeeebbeeeebbbebbbbbbebebbebbbeeeeeebbbbbbeb: queryA 426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525 :****************************************************************************************************: 7kms_D_1 426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525 SecStr : TT EEEEEEE TTTS TT TT EEE SS BS SSSS SS TTT SEEE TT TTTSEEEEEEEE B SS B: ExpBur :eeebebbbbbbebeeebbeeebbeebbbbeebeeebeeeeebeeeebeeeeeeebeeeeeebbeebbeebebeeeeeeeebbbbbbbbbbeeeeeeebbb: Contact : b queryA 526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625 :****************************************************************************************************: 7kms_D_1 526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625 SecStr : SSEEEEE SS EEEEEEEE TT EEE STT EEEEEETTTTEEEEEE S EEEEEEES TTT S EEEE S TTSTTTSS : ExpBur :beeeeeeeeeeebbebebeebeeebebeebeeeeeeeeeebeeeeeeebbbbbbeeeebbbbeebeeebbbbbbbbbeebeeebbbbeebebeebeeeee: queryA 626:ADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725 :*** *************************************** ***********************************: 7kms_D_1 626:ADQXXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725 SecStr : --------- S EEEETTEEEES EE SS B SEEEETTEEEEE -------------- EEEE B TTEEEEEEEEEEEEEEE: ExpBur :ebe---------eeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee--------------ebbbbeeeeeeeeeeeeeeeeeebbeebebebeee: queryA 726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825 :****************************************************************************************************: 7kms_D_1 726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825 SecStr :EEE EEEE SHHHHT S HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS SS BTTB TTTSB TTTTSS BHHHHHHHHH: ExpBur :bbbbbbebbebebeebbbbebeebeeebeeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeeeebeebebeebbeeeeeeeebbebbbbbbee: queryA 826:VTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925 :*** **************************************************************************: 7kms_D_1 826:VTLXXXXXXXXXXXXXXXXXXXXXXXAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925 SecStr : ----------------------- BTTEEEE SS HHHHHHHHHHHHHHHHHSTTHHHHSS HHHHHHHHHHTTT HHHHHHTHHHHHH: ExpBur :bee-----------------------eeeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbe: queryA 926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025 :************************************************************ **************************************: 7kms_D_1 926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025 SecStr :HHHHHHHHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHT TTSS SSHHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebeebbeebbeebeeebeebeebeebbeebeebbeebeeeeeeeeebebbebeebeeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbeeb: queryA 1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125 :****************************************************************************************************: 7kms_D_1 1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125 SecStr :HHHHHHHTTS STTSSSSSEEEEE EEETTEEEEEEEEEEEEEEEEEE S EEETTEEEEESSSEEEESSSSEEEE TTS B BTTSEEE S : ExpBur :bebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbebeeebeeebbeeeee: queryA 1126:CDVVIGIVNNTVYDPLQPELDSFK:1149 :************************: 7kms_D_1 1126:CDVVIGIVNNTVYDPLQPELDSFK:1149 SecStr :TTTSSS EE B SHHHHHHH : ExpBur :eeeeeebeeeebeeeeeeeeeeee: |