#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7kms_D_1_PA_1

Protein Model on 7kms_D_1_PA_1 (TEMPLATE: 7kms )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (B) polymer(polypeptide(L)) [1033 aa] Spike glycoprotein :SPIKE_SARS2
2 b PA 1 (C) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 519H (identity: 100.0 %/91.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7kms_D_1 identity=91.7%
queryA        26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125
                :*****************************************            ***********************************************:
7kms_D_1      26:PAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHXXXXXXXXXXXXFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATN: 125
SecStr          :  EEEESS  EE SSS    S EEEEEEEE  TTEEEEEE ------------    EEE SS EEEEE SS   EEEEEEESS SSSS  EEEEE SS :    
ExpBur          :eeebebeebbbbbbeeeeeeeeeeebeeebbbbeeebbbbe------------eebeebebeebbbbbbbbeeeebebbbbbeebeeeebbbbbbbeeee:    

queryA       126:VVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225
                :****************           *************************        ****************************************:
7kms_D_1     126:VVIKVCEFQFCNDPFLXXXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEP: 225
SecStr          :EEEE S     SS   -----------     TT     S   EEEE  S  -------- EEEEEEEEEEETTEEEEEEEEEEES TTS   S  EEEE:    
ExpBur          :bebbbbbbeeeeebeb-----------eeeeeebeebeeeeeeeeeeeeeee--------eeebbbbbbbeeebebeebbeeeebeeeeebbeeebbbee:    

queryA       226:LVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325
                :*********************              *****************************************************************:
7kms_D_1     226:LVDLPIGINITRFQTLLALHRXXXXXXXXXXXXXXGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES: 325
SecStr          :EEEEE      EEEEEE    --------------    EEE   EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS  SEEEEEEEE    SS :    
ExpBur          :eeebebeeebeebbbbbbeee--------------eebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeebeeebbebeeeeeee:    

queryA       326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425
                :****************************************************************************************************:
7kms_D_1     326:IVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL: 425
SecStr          :EE  S S    S HHHHS S    GGG EEE   SSB  SHHHHTTS  S  EEESS SGGGTTS  B   EEEEEEESGGGTTSSTT  SSHHHHT B :    
ExpBur          :bebeeeeeeebeeeebbeeeebebbebbeeeebeebebebeebeeeeeeeeeebbebeeeebbeeeebbbebbbbbbebebbebbbeeeeeebbbbbbeb:    

queryA       426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525
                :****************************************************************************************************:
7kms_D_1     426:PDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVC: 525
SecStr          : TT  EEEEEEE TTTS  TT  TT EEE   SS   BS          SSSS   SS  TTT  SEEE    TT  TTTSEEEEEEEE B  SS    B:    
ExpBur          :eeebebbbbbbebeeebbeeebbeebbbbeebeeebeeeeebeeeebeeeeeeebeeeeeebbeebbeebebeeeeeeeebbbbbbbbbbeeeeeeebbb:    
Contact         :                                                                                             b      

queryA       526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625
                :****************************************************************************************************:
7kms_D_1     526:GPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIH: 625
SecStr          :          SSEEEEE SS EEEEEEEE      TT  EEE STT EEEEEETTTTEEEEEE  S EEEEEEES TTT S  EEEE S  TTSTTTSS :    
ExpBur          :beeeeeeeeeeebbebebeebeeebebeebeeeeeeeeeebeeeeeeebbbbbbeeeebbbbeebeeebbbbbbbbbeebeeebbbbeebebeebeeeee:    

queryA       626:ADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725
                :***         ***************************************              ***********************************:
7kms_D_1     626:ADQXXXXXXXXXTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE: 725
SecStr          :   ---------  S EEEETTEEEES EE SS B  SEEEETTEEEEE  -------------- EEEE B           TTEEEEEEEEEEEEEEE:    
ExpBur          :ebe---------eeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee--------------ebbbbeeeeeeeeeeeeeeeeeebbeebebebeee:    

queryA       726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825
                :****************************************************************************************************:
7kms_D_1     726:ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNK: 825
SecStr          :EEE    EEEE SHHHHT S HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  BTTB  TTTSB TTTTSS BHHHHHHHHH:    
ExpBur          :bbbbbbebbebebeebbbbebeebeeebeeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeeeebeebebeebbeeeeeeeebbebbbbbbee:    

queryA       826:VTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925
                :***                       **************************************************************************:
7kms_D_1     826:VTLXXXXXXXXXXXXXXXXXXXXXXXAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN: 925
SecStr          :   -----------------------   BTTEEEE  SS HHHHHHHHHHHHHHHHHSTTHHHHSS     HHHHHHHHHHTTT  HHHHHHTHHHHHH:    
ExpBur          :bee-----------------------eeeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbe:    

queryA       926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025
                :************************************************************  **************************************:
7kms_D_1     926:QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLA:1025
SecStr          :HHHHHHHHHHHHHHS   TTTHHHHHHHHHHHHHHHHHHHHT  TTSS SSHHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebeebbeebbeebeeebeebeebeebbeebeebbeebeeeeeeeeebebbebeebeeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbeeb:    

queryA      1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125
                :****************************************************************************************************:
7kms_D_1    1026:ATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN:1125
SecStr          :HHHHHHHTTS   STTSSSSSEEEEE  EEETTEEEEEEEEEEEEEEEEEE  S EEETTEEEEESSSEEEESSSSEEEE TTS   B  BTTSEEE S :    
ExpBur          :bebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbebeeebeeebbeeeee:    

queryA      1126:CDVVIGIVNNTVYDPLQPELDSFK:1149
                :************************:
7kms_D_1    1126:CDVVIGIVNNTVYDPLQPELDSFK:1149
SecStr          :TTTSSS EE   B SHHHHHHH  :    
ExpBur          :eeeeeebeeeebeeeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123