#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7dk3_B_1_MA_1

Protein Model on 7dk3_B_1_MA_1 (TEMPLATE: 7dk3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) B 1 (B) polymer(polypeptide(L)) [1062 aa] Spike glycoprotein :SPIKE_SARS2
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dk3_B_1 identity=93.5%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7dk3_B_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     SS B     EEE SSTT B  SS    SSEEEEEEEE  TT EEEEEEE  ------- B     EE SSEEEEEEEESS    EEEEESSSSTT:    
ExpBur          :eeeebeeeeebeeeebebebbbbbbbeeeebeeeeeeeeebbbbbebebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dk3_B_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEEEE   SS  EEE   SSS    EEEE S S EEEEEEEEE            SSB EEEEEEEEEETTEEEEEEEEE   BS:    
ExpBur          :eebbbbbbebebebbebbebeebebbbbbbeebeeeeeeebeeebbeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbbeeeebebbeeeeebebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dk3_B_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS   S   BEEEEEE       EEEEE EEB  -------  S B  SEEEEEEE EEEEEEEEE TTSSEEEEEESSSSHHHHHHHHHTSSS  SEEE:    
ExpBur          :eebeeeebbbeeeeebebebebeebbbbbbbbee-------eeebbbbebbbbbbebeeeebbbebeeebebeebbbbeeeebbebebeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dk3_B_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEE       EEEE      B  STTTTS SS  BSSS EEEEE SSB   SHHHHTT  SEEEESSS SSHHHHS  SEEEEEEEEEEGGGSTT STT:    
ExpBur          :eeeeeeeeeeeebbbbeeeeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeebeeeebeeeeeeebeeebbbebebbbbbbebebeeebbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dk3_B_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  STIIIII    TT  EEEEEEE TTTT  TT  TT EEES  SS   TT        EE SSS  TTS BTTEE  EEE    TTS TTTSEEEEEEE:    
ExpBur          :eebebbeebbbbbeebebbbbbbebbeebbeeebbeebebbeeeeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbebbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dk3_B_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE SSS      S        SSEEEEEETTEEEEEEEEE      TT   EE TTSSEEEEE SSS  EEEEE SS SEEEEEE  TTT    EEEEE:    
ExpBur          :bbeeeeeebebbbeeeeeeeeeeebbebbbbbbeeebebeebeeebeeeeeeeeeeeeeebbbbbeeeeeebebeebeeebbbbbbbbeeebeebbbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dk3_B_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :T  S   -------------------- EEE SSEEEESSEE  S B  SEEEETTEEEEEE ------------  EEEEEEB           TTEEE:    
ExpBur          :eeebeee--------------------eeeebebbbbebbeebeeeeeeebebeeebbbbbee------------eebbbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7dk3_B_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
SecStr          :EEEEEEEEEEEEEEE    EEEE HHHHHSSS HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHTT   SS     SS   TT   TTTSB TTSSS:    
ExpBur          :bbeebebebeebbbbbbbebbbbebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebbebebeebbbeeeeee:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dk3_B_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          :  BHHHHHHHHH  --------------------------  SSEEEE  SS HHHHHHHHHHHHHHHHHTTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :ebbebbbbbbeebe--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeebebeebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dk3_B_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbebbeebbeebeeebeeeeeebbebeebeeebeebeeebeeebeeebebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dk3_B_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTTS   STTTS SSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSSEEEESSSEEEE SSSEEEE SSS   E:    
ExpBur          :ebeebeebbeebbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbbeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dk3_B_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :E BTTTEEE S TTTSTT EE   B THHHHHH :    
ExpBur          :ebbeeebeeeeebeeeeebeebebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

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