#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7dd2_B_1_D_1

Protein Model on 7dd2_B_1_D_1 (TEMPLATE: 7dd2 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(queryA) B 1 (D) polymer(polypeptide(L)) [1059 aa] Spike glycoprotein :SPIKE_SARS2
2 b D 1 (H) polymer(polypeptide(L)) [213 aa] The light chain of 3C1 fab 478T 479P 480C 481N 483V 486F 487N (identity: 100.0 %/93.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dd2_B_1 identity=93.2%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7dd2_B_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     S        EEE SS      S    SS EEEEEEEE  TT EEE   B  -------  B    EE TT EEEEEEESSS EEEEEEESSSSSS:    
ExpBur          :eeeebeeeeeeeeeebebebbbbbeeeeeeeeeebeebeeebbbbebebbebebee-------ebbbbeebebeebbbbbbbbbbebbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dd2_B_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE     SS EEEEETSSS  TT   EEES S   S  EEE         S   SS  EEEEEEE EETTEE  EE EEE   S:    
ExpBur          :eebbbbbeebeeeebebbebebeebbbbbbeebeeebeeebebeebeeeeeeeeeeeeeeeeebebeeeeeebeebebbbbbeeebebebbbeeeeeebe:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dd2_B_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS  S     EE   B       EEEEEEEEEE -------  S      EEEE   EEEEEEEEE SS  EEEEEESSS HHHHHHHHHT S   SEEE:    
ExpBur          :eebeeeebbbeeeeebeeebebeebbbbbbbbee-------eeeeebeebbbbbbebeeeebbbebeeebebeebbbbeeeeebbbbbeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dd2_B_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEEE     EE       EE   HHHHT S    SSS     B SEE  SSTTTSS   SEEE  SS SSS TT EES B  EEEEE STTSSS STT:    
ExpBur          :ebeeeeeeeeeebbbbeeeeeebebeebbeeeebebbeebeeeebeebbbebeebeeeeeeebeebeeeebeebeeebbbebbbbbbbbbbebbebbbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dd2_B_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :   TTTTTT B  TT  S EEE B TTTT  TT  TT EE    SS   BT           SSS   SSS SS     EE    TTS GGG  EEEEE :    
ExpBur          :eeeebbbebbbbbeebebbbbbeebbeebbeeeebeeeebbbeeeeebeeeeebeeeeeeeeeeeebeeeeeeebebbeeebebeeeeeeeebbbbbbbb:    
Contact         :                                                                bbbb b  bb                          

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dd2_B_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          : B   SS   EE S        SSEEEEEETTEE  EEEE       SS    B TTSSB EE  SSS   EEEE   EEEEEEEE  TTT    EEEEE:    
ExpBur          :bbbeeeeebebbbeeeeeeeeeeebbebbbbbeeeebbbeeeeeeeeeeeeeeeeeeeeeebbbbeeeebebbbeebeebebbbbbbbeeebeeebebee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************             ************************:
7dd2_B_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :S  SS  -------------------- EEE SSEEEES EE SS B  SEEEETTEEEEEE ------------- EEEEEEB           SS EE:    
ExpBur          :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :************************************************************************************************** *:
7dd2_B_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813
SecStr          :EEEEEEEEEEEEEEE     EEE TTTTT SS HHHHHTTSTT SHHHHHHHHHHHHHHHHHHHHHTTS   SS     S   STT   TTTS BTT - :    
ExpBur          :bbeebebebeebbbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebeeeeeeebeebebeebbbeeee-e:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                           ***********************************************************:
7dd2_B_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          : B TTHHHHHHS  ---------------------------  SEEE   SS HHHHHHHHHHHHHHHHHTTTSTTTSS     HHHHHHHHHHHTT  T:    
ExpBur          :eebebbebbbeebe---------------------------eebeeeeeeebeeeebbeebbbbbbbbbebbbebeeeeeeeeebeebbbebbeeeebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dd2_B_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHHSHHHHHHHHHHHHHHHHHHHHH GGGGHHHHHHHHTTHHHHHHHHTTTT  TTSS S HHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebbebbbebeeebeeeeeebeebeebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dd2_B_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHTTTSSSS   STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEE  BS EESSSEEEEESSSEEEE SSSEEEE SSS   B:    
ExpBur          :ebeebeeebeebeebbeebbbebbeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeeebbbeeeeeebbbebbebee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dd2_B_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :   TTTEEEEEESSSSTT EE     THHHHH  :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123