#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (D) | polymer(polypeptide(L)) [1059 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | G 1 (H) | polymer(polypeptide(L)) [213 aa] | The light chain of 3C1 fab | 486F (identity: 100.0 %/93.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dcx_C_1 identity=93.2% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7dcx_C_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : SS EEEE SS EE SS S EEEEEEEE TT EEEEEEBB ------- B EESTT EEEEEEESSS EEEEEEESSSSSS: ExpBur :eeeebeeeeebeeeebebebbbbbbeeeeeeeeebeebeeebbbbebebbebbbee-------eebbbeebebeebbbbbbbbbbebbbbbbbbbebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7dcx_C_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE EEEEEEEEBS SSS TT EEEEES S EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEES: ExpBur :eebbbbbbebeeebbebbebebbebbbbbbeeeeeebeeebeeeebeeeeeeeeeeeeeeeeebebeeeeeebeebbbbbbbeeebebebbeeeeeeebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7dcx_C_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SSS S EEEEEEEEE EEEEEE B ------- BSEEEEEE EEEEEEEEE TTS EEEEEETTT HHHHHHHHHT SS SEEE: ExpBur :eebeeeebbbeeebebeeebebeebbbbbbbbee-------eeebebeebbbbbbebeeeebbbebeeebebeebbbbeeeeebebbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7dcx_C_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE EE EE TTSTTSS B SSS EE SEE SS SS SS EE SS TT SSSS BS EEEE BEE STTSS TT: ExpBur :ebeebeeeeeeebebbeeeeeebebeebeeeeebebbbebeeeebeebbbeeeeeeeeeeeebeeeeeeeeeebeebbbbebebbbbbbbbebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7dcx_C_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : TTTTTT B TTB SEEEEEE TTTS TT B EEE SS TTB S SSS SSS SS EEE B TTS GGGS EEEEEE: ExpBur :eeeebbbebbbbbeebbbbbbbbebbeebeeeebbeebbbbeebeeebeeeeeeeeeeeeebeeeebeeeeeeebeebeeebebeeeeeeeebbbbbbbb: Contact : b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7dcx_C_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEB SS BB S SSEEEEEETTEE EEEE S SS EEE TTSSEEEEE SSSS EEEEE EEEEEEEE TTT EEEES: ExpBur :bbbeeeeebebbbeeeeeeeeeeebbebbbbebeeebbbeeeeeeeeeeeeeeeeeeeeeebbbbbeeeeebbbeebeebbbbbbbbbeeebeeebebbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ ************************: 7dcx_C_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :S SS -------------------- EEE SSSEEES EE SS B SEEEETTEEEEEE ------------- EEEEEEB SSEEE: ExpBur :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbeee-------------eebbbbeeeeeeeeeeeeeeeebe: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :************************************************************************************************** *: 7dcx_C_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813 SecStr :EEEEEE EEEEEEE EEE HHHHH SS HHHHHHHGGG THHHHHHHHHHHHHHHHHHHHHHHT SS S STT TTTTS TT - : ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebebbeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebeeeeeeebeebebeebebeeee-e: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ***********************************************************: 7dcx_C_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHS --------------------------- SEEE SS HHHHHHHHHHHHHHHHHSTTGGGTSS HHHHHHHHHHTTT T: ExpBur :ebbebbebbbeebe---------------------------eeebeeeeeebeeeebbeebbbbbbbbbebbbebeeeeeeeeebeebbbebbeebbbbe: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7dcx_C_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :THHHHTHHHHHHHHHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbeeebeeebbeebeebbeebbeebeeeeeebeebeebeebbeebbeebeeebeeeeebebeebeebeeeeeeeebeeebeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7dcx_C_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHTSSSS TTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE SSS B: ExpBur :ebeebeeebeebbebbeebbebbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeeeebbbeeeeebbbbebbebee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7dcx_C_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : TTTEEEEEESSS TT TTTTTT : ExpBur :ebbeeebeeeeebeeeeeeeebebeeeeeeeeee: |