#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7dcc_H_1_E_1

Protein Model on 7dcc_H_1_E_1 (TEMPLATE: 7dcc )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) H 1 (K) polymer(polypeptide(L)) [1061 aa] Spike glycoprotein :SPIKE_SARS2
2 b E 1 (F) polymer(polypeptide(L)) [213 aa] The light chain of 3C1 fab 369Y 374F 375S 376T 377F 378K 379C 380Y 381G 382V 383S 384P 385T 407V 408R 410I 411A 412P 414Q (identity: 100.0 %/93.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dcc_H_1 identity=93.4%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7dcc_H_1      14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
SecStr          :     S        EEE SS     SS     S EEEEEEEE  TT EEEE  EE -------  B    EE TT EEEEEEESSS   EEEEESSSSSS:    
ExpBur          :eeeebeeeeebeeeebebebbbbbeeeeeeeeeebeeeeeebbbbeeebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7dcc_H_1     114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
SecStr          :S EEEEEE SS EEEEEE   EEEEEEEEE   SSS TT B   EEES   S  EEE             SS  EEEEEEE EETTEEEEEE EEE   S:    
ExpBur          :eebbbbbbebeeeebbbbebebbebbbbbbeebeeeeeeebeeeebeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeebebbbbeeeeebeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7dcc_H_1     214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
SecStr          :SS   S    EEEEEEE      EEEE EEEE  -------    B  EEEEEEEE EEEEEEEEE SS  EEEEEETTT HHHHHHHHHT S   SEEE:    
ExpBur          :eebeeeebbbeeeeebeeebebeebbbbbbbbee-------eeebebeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7dcc_H_1     314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
SecStr          :EEEEE     SEEE  SS S B   HHHHS S    STT   EEE SSB  THHHHTTS  SEEEE SS HHHHHTS  SEEEEEEEEE TTSGGG SSS:    
ExpBur          :ebeebebeeeeebbbbeeeeeebeeeebbeeeebebbbebeeeebbebbbebeebeeeeeeeebebeeeeeeebeeeebbbbbbbbbbbebebbebbbee:    
Contact         :                                                       b    bbbbbbbbbbbb                     bb bbb 

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7dcc_H_1     414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
SecStr          :  HHHHTTT    TT   EEEEEE TTTS  TT     EEE   SS   TT        EE SSS  TTS BTTEE SEEE    TTS STTS EEEEEE:    
ExpBur          :eeeebbbebbbbbeebebbbbbbebeeebbeeebbeebebbeeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb:    
Contact         :b                                                                                                   

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7dcc_H_1     514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
SecStr          :EEE  SS   SS SS      SS EEEEE SS EEEEEEEE      SS  EEE TTS EEEEE SSS  EEEEE  S EEEEEEE  TTT    EEEES:    
ExpBur          :bbeeeeeeeebbeeeeeeeeeeeebbebbbeeeeeebbbeebeeeeeeeeeebeeeeeebebbbbeeeeebbebeebbeebbbbbbbeeeebeeebebee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7dcc_H_1     614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713
SecStr          :S  SS  -------------------- EEE SS EEES EE SS  B  EE SSSEEEEEE ------------  EEEEEE B S        TT EE:    
ExpBur          :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :************************************************************************************************** *:
7dcc_H_1     714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813
SecStr          :E   EEEEEEEEEEE     EEE HHHHHSTT SHHHHTTGGG SHHHHHHHHHHHHHHHHHHHHHTTT   SS     S   STT  TTTTS BTT - :    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebeeeeeeebeebebebbbbeeee-e:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7dcc_H_1     814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
SecStr          : B HHHHHHHTT  --------------------------  SSEEE   SS HHHHHHHHHHHHHHHHHSTTHHHHSS     HHHHHHHHHHTTT  T:    
ExpBur          :eebebbeebbeeee--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbebbebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7dcc_H_1     914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013
SecStr          :HHHHH HHHHHHHHHHHHHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGGS TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbeeeeeebbeebeebbeebeeebeeeeeebeebbebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7dcc_H_1    1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
SecStr          :HHHHHHHHHHHHHHHHHHTTSS    TTSSSSSEEEEEEEEEETTEEEEEEEEEEE   EEE  BS EESSSSEEEESSSEEEESSSSEEEE SSS   B:    
ExpBur          :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeebbbbeeeebbbbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7dcc_H_1    1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
SecStr          :  BGGGEEE S TTTSTT EE   B THHHHHH :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123