#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7cn9_A_1_B_1

Protein Model on 7cn9_A_1_B_1 (TEMPLATE: 7cn9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [1011 aa] Spike glycoprotein :SPIKE_SARS2
2 b B 1 (B) polymer(polypeptide(L)) [1010 aa] Spike glycoprotein :SPIKE_SARS2 319R 557K 558K 559F 562F 563Q 564Q 565F 566G 567R 569I 571D 589P 592F 613Q 665P 668A 669G 697M 699L 700G 701A 702E 703N 704S 705V 706A 707Y 708S 711S 712I 713A 715P 961T 965Q 968S 969N 970F 971G 995R 1006T 1010Q 1024L 1039R 1041D 1042F 1045K 1046G 1047Y 1068V 1069P 1072E 1078A 1079P 1089F 1094V 1107R 1121F 1123S 1124G 1128V 1129V 1130I (identity: 100.0 %/90.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7cn9_A_1 identity=90.6%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :****************************************************************************************************:
7cn9_A_1      14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113
SecStr          : EEE  S   B SSS    SSEEEEEEEE  SS EEE     S   SSS        B   SSEEEEEEESS S   EEEESS SSSS  EEEEE SS E:    
ExpBur          :eebebebbbbbbeeeeeeeeeeeeeeeebbbeeeebeeeebeeeebeeeeeeeeeeeeeeeebbbbbbeeeeeebebbbbbeebeeeebbbbbeeeeeeb:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************************************************   ********************************************:
7cn9_A_1     114:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLXXXQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213
SecStr          :EEE S     S    S  SSSS  SS      S   SSS   EEE S SSS  ---  SSEEEEE  BEESSSBEE EE EEEES  SS       BEE :    
ExpBur          :bbebbbeeebeebbeeebeeeeebeeebeeeeebeeeeeeeeeeeeeebeeeb---eeeebbbbbbbbbeeebebbbbbbebebeeeeebeeeeebbebe:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :****************************************************************************************************:
7cn9_A_1     214:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313
SecStr          :   B  S   EE         SSSS     SSS  S   EEEE EEEEEEEEE TTS EEEEEESSSSHHHHHHHHTTSS   SEEEEEE       S  :    
ExpBur          :eeeebeeebeebeeeeeebbeeeeeeeeebeeeeeeeeebbbebeeeebbbebeeebebeeebbbeeeebbbbbbeeeeeebeebeeebeeeebeeeeeb:    
Contact         :                                                                                            b       

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
7cn9_A_1     314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413
SecStr          :B  SSS    S HHHHT S    TTT   B   SS      TT  SSSS S  SS   SSTTT B   B B   S  STTGGG  TT SSSHHHHT    :    
ExpBur          :ebbeeeeeebeeeeeeeeeeebbeeeeeeeeebeeebbbeeeeeeeeeeeeeeeeeeeeebebeebbbbebebeebbeeeeeeeeeebeeebbbeeeeee:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :*****************          *****                                ************************************:
7cn9_A_1     414:DDFTGCVIAWNSNNLDSXXXXXXXXXXRLFRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513
SecStr          :        B   STT  ----------     --------------------------------         SSSSSS    B    B SSSS  SSB :    
ExpBur          :eeeebbebbbebeeeee----------eeeee--------------------------------eeeeeeebeeeeeeebbebbbebbebeeeeeeeeeb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :***********************************************************************************************     :
7cn9_A_1     514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPXXXXX: 613
SecStr          :         SS   EE SSSEE SEEE       TT S  EETTTEE EE  TTTT  EEEE      EEEEES TTT    EEEE S   S   -----:    
ExpBur          :bbeeeeeeeeebbebebeebebebebeebeeebeeeeeebeeeeeeebbbbbbeeeebbbbeebeeeebbbbbbbbeebeeebbbeeebeeeeee-----:    
Contact         :                              bbb  bbbbbb b b                 b  b                    b             

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :             *********************************             *****************************************:
7cn9_A_1     614:XXXXXXXXXXXXXSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAXXXXXXXXXXXXXSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------   B  TT  EES     S    SSB SSS B -------------   SSS   B             TTEEE   EE  B  EEE:    
ExpBur          :-------------eeebebebbbbeebeeeeeeeeeebebeeebbe-------------eeeeeebbbbeebeeeeeeeeeeeeeeebbeebebebeeeb:    
Contact         :                                      b  bb                           b bbbbbbbbbb  bbb b           

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :*************************************************************************************   ************:
7cn9_A_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXXXRSFIEDLLFNKV: 813
SecStr          :EE      EE HHHHHSSS HHHHHHHTTS THHHHHHHHHHHHHHHHHHHHHHHHTTSSS     S    TT   TTTS  TT ---  HHHHHHHTTS:    
ExpBur          :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeeeeeeebeebbeeeee---ebebbebbeeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**                        **************************************************************************:
7cn9_A_1     814:TLXXXXXXXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          :  ------------------------   SSEE    SS HHHHHHHHHHHHHHHHHT THHHHSS     HHHHHHHHHHHHT  HHHHHHHHHHHHHH:    
ExpBur          :ee------------------------eeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeebeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
7cn9_A_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHTT  SS SSS HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeebbeebbeeeeebeebeeebeeeeeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebb:    
Contact         :                                  b   b  bbbb                       b          b   b             b  

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
7cn9_A_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHHSS    TTTSSSSEEEEEEE   SSEEEEEEEEE EE   EEE  S B SSSEEEEESSSEEEE SS EEEE SSS      BTTTEEEEEES:    
ExpBur          :ebbeebbbbbbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebeebbbeeeebbeeeeeebbbeeeebebbbebeebeeebbeebbeeeeeb:    
Contact         :            b bb  bbb                    bb  b     bb         b    b            b             b bb  

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
7cn9_A_1    1114:DVVIGIVNNTVYDP:1127
SecStr          :SS SS B    B  :    
ExpBur          :eeeeeeeeeeeeee:    
Contact         : bbb                                                                                                


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