#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [1011 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [1010 aa] | Spike glycoprotein :SPIKE_SARS2 | 319R 557K 558K 559F 562F 563Q 564Q 565F 566G 567R 569I 571D 589P 592F 613Q 665P 668A 669G 697M 699L 700G 701A 702E 703N 704S 705V 706A 707Y 708S 711S 712I 713A 715P 961T 965Q 968S 969N 970F 971G 995R 1006T 1010Q 1024L 1039R 1041D 1042F 1045K 1046G 1047Y 1068V 1069P 1072E 1078A 1079P 1089F 1094V 1107R 1121F 1123S 1124G 1128V 1129V 1130I (identity: 100.0 %/90.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cn9_A_1 identity=90.6% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :****************************************************************************************************: 7cn9_A_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE S B SSS SSEEEEEEEE SS EEE S SSS B SSEEEEEEESS S EEEESS SSSS EEEEE SS E: ExpBur :eebebebbbbbbeeeeeeeeeeeeeeeebbbeeeebeeeebeeeebeeeeeeeeeeeeeeeebbbbbbeeeeeebebbbbbeebeeeebbbbbeeeeeeb: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************************************************** ********************************************: 7cn9_A_1 114:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLXXXQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE S S S SSSS SS S SSS EEE S SSS --- SSEEEEE BEESSSBEE EE EEEES SS BEE : ExpBur :bbebbbeeebeebbeeebeeeeebeeebeeeeebeeeeeeeeeeeeeebeeeb---eeeebbbbbbbbbeeebebbbbbbebebeeeeebeeeeebbebe: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :****************************************************************************************************: 7cn9_A_1 214:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr : B S EE SSSS SSS S EEEE EEEEEEEEE TTS EEEEEESSSSHHHHHHHHTTSS SEEEEEE S : ExpBur :eeeebeeebeebeeeeeebbeeeeeeeeebeeeeeeeeebbbebeeeebbbebeeebebeeebbbeeeebbbbbbeeeeeebeebeeebeeeebeeeeeb: Contact : b queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 7cn9_A_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr :B SSS S HHHHT S TTT B SS TT SSSS S SS SSTTT B B B S STTGGG TT SSSHHHHT : ExpBur :ebbeeeeeebeeeeeeeeeeebbeeeeeeeeebeeebbbeeeeeeeeeeeeeeeeeeeeebebeebbbbebebeebbeeeeeeeeeebeeebbbeeeeee: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :***************** ***** ************************************: 7cn9_A_1 414:DDFTGCVIAWNSNNLDSXXXXXXXXXXRLFRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr : B STT ---------- -------------------------------- SSSSSS B B SSSS SSB : ExpBur :eeeebbebbbebeeeee----------eeeee--------------------------------eeeeeeebeeeeeeebbebbbebbebeeeeeeeeeb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :*********************************************************************************************** : 7cn9_A_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPXXXXX: 613 SecStr : SS EE SSSEE SEEE TT S EETTTEE EE TTTT EEEE EEEEES TTT EEEE S S -----: ExpBur :bbeeeeeeeeebbebebeebebebebeebeeebeeeeeebeeeeeeebbbbbbeeeebbbbeebeeeebbbbbbbbeebeeebbbeeebeeeeee-----: Contact : bbb bbbbbb b b b b b queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ********************************* *****************************************: 7cn9_A_1 614:XXXXXXXXXXXXXSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICAXXXXXXXXXXXXXSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :------------- B TT EES S SSB SSS B ------------- SSS B TTEEE EE B EEE: ExpBur :-------------eeebebebbbbeebeeeeeeeeeebebeeebbe-------------eeeeeebbbbeebeeeeeeeeeeeeeeebbeebebebeeeb: Contact : b bb b bbbbbbbbbb bbb b queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :************************************************************************************* ************: 7cn9_A_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXXXRSFIEDLLFNKV: 813 SecStr :EE EE HHHHHSSS HHHHHHHTTS THHHHHHHHHHHHHHHHHHHHHHHHTTSSS S TT TTTS TT --- HHHHHHHTTS: ExpBur :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeeeeeeebeebbeeeee---ebebbebbeeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** **************************************************************************: 7cn9_A_1 814:TLXXXXXXXXXXXXXXXXXXXXXXXXQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : ------------------------ SSEE SS HHHHHHHHHHHHHHHHHT THHHHSS HHHHHHHHHHHHT HHHHHHHHHHHHHH: ExpBur :ee------------------------eeeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeebeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 7cn9_A_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHTT SS SSS HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeebbeebbeeeeebeebeeebeeeeeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebb: Contact : b b bbbb b b b b queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 7cn9_A_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHHSS TTTSSSSEEEEEEE SSEEEEEEEEE EE EEE S B SSSEEEEESSSEEEE SS EEEE SSS BTTTEEEEEES: ExpBur :ebbeebbbbbbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebeebbbeeeebbeeeeeebbbeeeebebbbebeebeeebbeebbeeeeeb: Contact : b bb bbb bb b bb b b b b bb queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 7cn9_A_1 1114:DVVIGIVNNTVYDP:1127 SecStr :SS SS B B : ExpBur :eeeeeeeeeeeeee: Contact : bbb |