#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1023 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | G 1 (G) | polymer(polypeptide(L)) [214 aa] | Heavy chain of H014 Fab | 478T 479P 480C 481N 483V 484E 485G 486F (identity: 100.0 %/90.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cai_C_1 identity=90.9% |
queryA 25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124 :********************************************* *********************************************: 7cai_C_1 25:PPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNAT: 124 SecStr : B TT EE SSS SS EEE B SS B ---------- EE TT EEE EESS EEEEEEESSSSSSS EEEEEEETT: ExpBur :eeeeeebebbbbbbbeeeeeeeeeeebeebbbbbeeebeebeeee----------ebeebebeebbbbbbbbeeebbbbbbbbbebebeeebbbbebeee: queryA 125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224 :************************************************ ***************************************: 7cai_C_1 125:NVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALE: 224 SecStr :EEEEE B B S EE SS SSS SSTT TTBS B EE ------------- EEEEEEEEEETTEEEEEEEEEE SSS SS EEE: ExpBur :eeebbbbbbebeeebbbbbeeeeeeebeebeeeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebbbbbeeeebeeeebbeeeebbbe: queryA 225:PLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324 :********************* **************************************************************: 7cai_C_1 225:PLVDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXXAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE: 324 SecStr :EEEE TT SEEEEEEEE ----------------- B EEEEE TTS EEEESTT HHHHHHHHH SS SEEEEEEEE : ExpBur :eeeebeeebebeebbbbbbee-----------------ebbbbbebeeebbbbebbeebebeebbbbeeeebbebbbeeeebebeebebebeebebeeee: queryA 325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424 :****************************************************************************************************: 7cai_C_1 325:SIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYK: 424 SecStr : EE S B TTHHHHT S EETTS EEEEE SSB TTGGGSSS SEEEESSS GGGGTTS SSEEEEEEEEEGGGGGGSSSS SHHHHTT : ExpBur :ebbbbeeeeeebebeebbeeeebbbbebbeeeebeebebebeebeeeeeeeeeebeebeeeebeeebbbebebbbbbbebebbebbbeeeeebbbbebbb: queryA 425:LPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524 :******************** ******************************************************************************: 7cai_C_1 425:LPDDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATV: 524 SecStr : SS EEEEEEE TTTT -- SSEEES SS TT SSS TT BTTB SEEE TTS TTTSEEEEEEEE SSS SS: ExpBur :bbeebebbbbbbebeeebbe--ebeebebbeebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbebbebeeeeeebebbbbbbbbbbeebebebbb: Contact : bbbb bbbb queryA 525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAI: 624 :************************************************************************************************ : 7cai_C_1 525:CGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXX: 624 SecStr :B S SSEEEEEETTEEEEEE SS TTS EE SSS EE B EEEEEEE TTT S EEEEET TT ----: ExpBur :bbeeeeeebeeeebbebbbbbbeeebbbbebeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeebbbbeeebeeeee----: queryA 625:HADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724 : ************************************ ************************************: 7cai_C_1 625:XXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTT: 724 SecStr :---------------- EEE SSEEEESEEEES S SEEEETTEEE S ------------ EEEEE S TTEEE S EEE EE: ExpBur :----------------eeeebebbbbeebeebeeeeeeebebeeebbbbeee------------eebbbbbeeeeeeeeeeeeeeeeeebbbebebebee: queryA 725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824 :****************************************************************************************************: 7cai_C_1 725:EILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFN: 824 SecStr :EEEE EE HHHHHS S HHHHHHHTTSTHHHHHHHHHHHHHHHHHHHHHHHHTTT SS SS SSS TTTS TTSSS HHHHHHHH: ExpBur :ebbbbbbebbbbebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebeeeeeeebeebebeebbeeeeeebeebebbbbbbe: queryA 825:KVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924 :*** ***********************************************************************: 7cai_C_1 825:KVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIA: 924 SecStr :H -------------------------- SSEE SS HHHHHHHHHHHHHHHHHSTTTTTTSS GGGTTTHHHHTTT HHHHHHHHHHHH: ExpBur :ebe--------------------------eeeebeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebb: queryA 925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024 :************************************************************* *************************************: 7cai_C_1 925:NQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANL:1024 SecStr :HHHHHHHHHHHHHHHS TTHHHHHHHHHHHHHHHHHHHGGG TTSS SSHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :eebeebbeebeeebeeeeeebeebeebbeebeebeeebeeebeeeeebeebebeebbeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbee: queryA 1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124 :****************************************************************************************************: 7cai_C_1 1025:AATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSG:1124 SecStr :HHHHHHHTTSS STTTSSSSEEEEEE EETTEEEEEEEEEEE EEE S EESSSSEEEESSS EEESSSSEEE SSS EE BTTTEEE S: ExpBur :bbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbeeeebebbbeeeebbbbbebbbeeeebbeeebeeee: queryA 1125:NCDVVIGIVNNTVYDPLQPELDS:1147 :***********************: 7cai_C_1 1125:NCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : TTTSSS EE B SHHHHHT : ExpBur :ebeeeeeeeeeebeeeeeeeeee: |