#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1017 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [1017 aa] | Spike glycoprotein :SPIKE_SARS2 | 38Y 41K 42V 43F 199G 200Y 224E 225P 230P 231I 369Y 370N 372A 413G 737D 740M 755Q 756Y 757G 758S 759F 762Q 765R 786K 787Q 788I 789Y 790K 792P 796D 797F 854K 855F 861L 863P 864L 865L 869M 872Q 873Y 883T 886W 890A 894L 895Q 896I 897P 898F 900M 904Y 907N 913Q 914N 917Y 918E 963V 979D 981L 982S 983R 984L 985D 986K(P) 988E 1005Q 1012L 1027T 1030S 1031E 1034L 1035G 1039R (identity: 98.6 %/91.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zp1_C_1 identity=91.4% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6zp1_C_1 18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117 SecStr : EEE S B SSS SEEEEEEEEE TT EEEEE S ---------- EE S EEEEEEESS EEEEEEESS BSSS EEEEE SS E: ExpBur :eebebebbbbbbbeeeeeeeeeeebeeebbbbeeebeebebee----------ebeebebeebbbbbbbbebbbbbbbbbbbebeeeeebbbbbbeeeee: Contact : b bbb queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** *********************** ***********************************************: 6zp1_C_1 118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFXXXXEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217 SecStr :EEE B SS EE --------- SS S S S EEE ---- SSEEEEEEEEEEEETTEEEEEEEEEEEEE SSS SS BEEE: ExpBur :bbbbbbbebeeebbbbe---------eeeeeeeeeeeeeeeeeeebeee----eeeeeebeebebbbbbeeeeebbbbbeebebeeeeebbeeeebbeee: Contact : bb bb queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :******************* *****************************************************************: 6zp1_C_1 218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317 SecStr :EEEE EEEEEEEE ---------------- EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEEEEEEE SSEE: ExpBur :eebeeebebeebbbbbbee----------------ebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeeeeeeeeeeb: Contact : bb queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6zp1_C_1 318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417 SecStr :EE B HHHHS S GGG EEEEE SEE HHHHHHSTT SEEEESSS SSTTTT BS EEEEEEEEEGGGGGGSSTT SHHHHHT : ExpBur :ebbeeeeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebeeebbbbbbbbbbbbbbebeebbbbeeeeebbebbbbbb: Contact : bb b b queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6zp1_C_1 418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517 SecStr :TT EEEEEE TTTT TT B EEE SS SS EESSSS SS STTEE SEEE B TTS GGGSEEEEEEEEE SSS EE : ExpBur :eebebbbbbbebeeebbeeebbeebeebeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebbbeeebeeeebbbbbbbbbbbebeeebbbbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 6zp1_C_1 518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617 SecStr :S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET SS ------: ExpBur :eeeeeebeeeebbebbbbebeeebebeeeeeebeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeeebbbeeebeeeee------: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ************************************ **************************************: 6zp1_C_1 618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :-------------- EEEETTEEEES EE SS B SEEEETTEEEEEE ------------ EEEEEEB S TTEEEEEEEEEEEEEEEE: ExpBur :--------------eebebeebbbeebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6zp1_C_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSS HHHHHHHTT : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebebeeeeebeebebeebbeeeeeebebbebbbbbbeeb: Contact : b b bbbbb b b bbbbb b bb queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :* *************************************************************************: 6zp1_C_1 814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT HHHHHHTHHHHHHH: ExpBur :e--------------------------eeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb: Contact : bb b bbb b bb b b b bbbbb b b b bb bb queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6zp1_C_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHHTT TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebeebeeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: Contact : b b bbbbbb b b b queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6zp1_C_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS EE BTTTEEEEEET: ExpBur :ebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbeeeebbeebbeeeeee: Contact :b bb bb b queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 6zp1_C_1 1114:DVVIGIVNNTVYDP:1127 SecStr :TSSTT EE B : ExpBur :eeeeeeeeeebeee: |