#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6zp1_C_1_A_1

Protein Model on 6zp1_C_1_A_1 (TEMPLATE: 6zp1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) C 1 (C) polymer(polypeptide(L)) [1017 aa] Spike glycoprotein :SPIKE_SARS2
2 b A 1 (A) polymer(polypeptide(L)) [1017 aa] Spike glycoprotein :SPIKE_SARS2 38Y 41K 42V 43F 199G 200Y 224E 225P 230P 231I 369Y 370N 372A 413G 737D 740M 755Q 756Y 757G 758S 759F 762Q 765R 786K 787Q 788I 789Y 790K 792P 796D 797F 854K 855F 861L 863P 864L 865L 869M 872Q 873Y 883T 886W 890A 894L 895Q 896I 897P 898F 900M 904Y 907N 913Q 914N 917Y 918E 963V 979D 981L 982S 983R 984L 985D 986K(P) 988E 1005Q 1012L 1027T 1030S 1031E 1034L 1035G 1039R (identity: 98.6 %/91.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zp1_C_1 identity=91.4%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6zp1_C_1      18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117
SecStr          : EEE  S   B SSS    SEEEEEEEEE  TT EEEEE S  ----------    EE  S EEEEEEESS  EEEEEEESS BSSS  EEEEE SS E:    
ExpBur          :eebebebbbbbbbeeeeeeeeeeebeeebbbbeeebeebebee----------ebeebebeebbbbbbbbebbbbbbbbbbbebeeeeebbbbbbeeeee:    
Contact         :           b  bbb                                                                                   

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************         ***********************    ***********************************************:
6zp1_C_1     118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFXXXXEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 217
SecStr          :EEE    B  SS  EE ---------   SS S S   S   EEE    ----    SSEEEEEEEEEEEETTEEEEEEEEEEEEE SSS SS   BEEE:    
ExpBur          :bbbbbbbebeeebbbbe---------eeeeeeeeeeeeeeeeeeebeee----eeeeeebeebebbbbbeeeeebbbbbeebebeeeeebbeeeebbeee:    
Contact         :                                                                        bb                       bb 

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*******************                *****************************************************************:
6zp1_C_1     218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317
SecStr          :EEEE      EEEEEEEE ----------------   EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS   SEEEEEEEEE   SSEE:    
ExpBur          :eebeeebebeebbbbbbee----------------ebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebeeebeeeeeeeeeeb:    
Contact         :   bb                                                                                               

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6zp1_C_1     318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 417
SecStr          :EE      B   HHHHS S    GGG EEEEE SEE  HHHHHHSTT SEEEESSS SSTTTT  BS EEEEEEEEEGGGGGGSSTT  SHHHHHT    :    
ExpBur          :ebbeeeeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebeeebbbbbbbbbbbbbbebeebbbbeeeeebbebbbbbb:    
Contact         :                                          bb b                                        b             

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
6zp1_C_1     418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517
SecStr          :TT   EEEEEE TTTT  TT B   EEE   SS   SS        EESSSS  SS  STTEE SEEE  B TTS GGGSEEEEEEEEE  SSS   EE :    
ExpBur          :eebebbbbbbebeeebbeeebbeebeebeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebbbeeebeeeebbbbbbbbbbbebeeebbbbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :**********************************************************************************************      :
6zp1_C_1     518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617
SecStr          :S        SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEET  SS  ------:    
ExpBur          :eeeeeebeeeebbebbbbebeeebebeeeeeebeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeeebbbeeebeeeee------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :              ************************************            **************************************:
6zp1_C_1     618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :-------------- EEEETTEEEES EE SS B  SEEEETTEEEEEE ------------  EEEEEEB  S        TTEEEEEEEEEEEEEEEE:    
ExpBur          :--------------eebebeebbbeebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6zp1_C_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE     EEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH   SS     SS  STT   TTTS  TTSSS   HHHHHHHTT :    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebebeeeeebeebebeebbeeeeeebebbebbbbbbeeb:    
Contact         :          b  b              bbbbb  b  b                    bbbbb b   bb                             

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :*                          *************************************************************************:
6zp1_C_1     814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          : --------------------------  SSEEE   SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHTTT  HHHHHHTHHHHHHH:    
ExpBur          :e--------------------------eeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb:    
Contact         :                           bb     b bbb   b  bb         b  b   b   bbbbb b   b  b     bb  bb        

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
6zp1_C_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHHTT  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebeebeeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    
Contact         :                                    b               b bbbbbb b                b      b              

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6zp1_C_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS   EE BTTTEEEEEET:    
ExpBur          :ebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbebbbeeeebbeebbeeeeee:    
Contact         :b  bb  bb   b                                                                                       

queryA      1127:DVVIGIVNNTVYDP:1140
                :**************:
6zp1_C_1    1114:DVVIGIVNNTVYDP:1127
SecStr          :TSSTT EE   B  :    
ExpBur          :eeeeeeeeeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123