#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6zgf_B_1_U_1

Protein Model on 6zgf_B_1_U_1 (TEMPLATE: 6zgf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) B 1 (B) polymer(polypeptide(L)) [1060 aa] Spike glycoprotein :A0A6B9WHD3_CVHSA
2 b U 1 (U) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1134N (identity: 100.0 %/91.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zgf_B_1 identity=91.6%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :*****   ********** ***************** ****************           ************************************:
6zgf_B_1      45:QCVNLXXXTQLPPAYTNSSTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHXXXXXXXXXXXRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 144
SecStr          :     ---     EEEEESEEEEE  SS    S EEEEEEEE  TTEEEEE  -----------      EE  S EEEEEEESS  EEEEEEESS SSS:    
ExpBur          :eeeee---eeeeeeebebbebbbbbbeeeeeeeeeeebeeebbbbeeebbebe-----------eeeeeebebeebbbbbbbbeeebbbbbbbbbebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :*******************************       **********************            ****************************:
6zgf_B_1     145:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYXXXXXXXWMESEFRVYSSANNCTFEYVSQXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLV: 244
SecStr          :S EEEEE  SS  EEEEE EEEEEEEEEEE -------   EEEEEEEEE    EEE   ------------  EEEEEEEEEETTEEEEEEEEEE    :    
ExpBur          :eebbbbbeeeebeebbbbebebbebbbbbbe-------eeeeeeebeeeeeeeeeeeeee------------eeebebbbbbeeeeebbbbeeebeeeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**** ****************************               ****************************************************:
6zgf_B_1     245:RDLPPGFSALEPLVDLPIGINITRFQTLLALHRXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 344
SecStr          :SS   SEEEEEEEEEE       EEEEEEEEE ---------------  EEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS   SB  :    
ExpBur          :eebbeeebbbeeeeebebebebeebbbbbbbee---------------ebbbbbbebeebbbbbebeeebbbeebbbbbbebbbbbbbeeeeeebeeeee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :********** ********************* ************************* ****************************** **********:
6zgf_B_1     345:QTSNFRVQPTDSIVRFPNITNLCPFGEVFNATTFASVYAWNRKRISNCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFTNVYADSFVITGDEVRQIAPG: 444
SecStr          :B    S    EEEEE     SB  TTTTTT SS  BGGG EEEEE SEE  GGGGTTT   SEEEESSS GGGSSS EESEEEEEEEEEEGGGGGGSSTT:    
ExpBur          :ebeeebbeeeeebbbbeeeeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeeeeeeebeeeeeeebebbbbbbbebbbbbbbbebbebbbee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :*************************   * * *** ********* ****************** ****  * *** **  *** ** *** ********:
6zgf_B_1     445:QTGKIADYNYKLPDDFTGCVIAWNSKHIDAKEGGNFNYLYRLFRKANLKPFERDISTEIYQAGSKPCNGQTGLNCYYPLYRYGFYPTDGVGHQPYRVVVL: 544
SecStr          :  SSHHHHT    SS  EEEEEEE HHHH  TT  TT EEE   SS   TT        EE SSS  SS   SSEE SEEE    TT  GGGSEEEEEEE:    
ExpBur          :eeeebbbebbebbeebebbbbbbebeeebbeeebbeebbbbeebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbeebebeeebeeeebbbbbbbb:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :***** **********************************************************************************************:
6zgf_B_1     545:SFELLNAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 644
SecStr          :EEE  SS  SEE S        SSEEEEEETTEEEEEEEEE      SS  EEE TTSSEEEEE SSS  EEEEE S    EEEEB  TTT    EEEET:    
ExpBur          :bbeeeeeeeebbbeeeeeeeeeeebbebbbbeeeeebbbeebeeebeeeebbbeeeeeeeebbbbbeeeebbbbeebeeebbbbbbbbbeebeebbbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :****************************************************************           *************************:
6zgf_B_1     645:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 740
SecStr          :T  SSSHHHHTTTTSS TTGGGTTSSSS EEETTEEEES EE SS    SEEEETTEEEEEE  -----------  EEEEEE            TTEEE:    
ExpBur          :ebebeebeeebbbeebeeebeeebeeeeebebebbbbbebeebeeeeeeebebeeebbbbeeee-----------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
6zgf_B_1     741:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 840
SecStr          :EE  EEEEEEEEEEE    EEEE HHHHHT S SSTTTSTTSS STTHHHHHHHHHHHTHHHHHHHHHHTT  S          SS   TTTS  SSSGG:    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeeeeebeeebeebbeebbebbeebbbebeeeeeeeeeeebeebebeebbeeeeeee:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :***************      *******      ******************************************************************:
6zgf_B_1     841:KRSFIEDLLFNKVTLXXXXXXKQYGDCLXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 940
SecStr          :G  HHHHHHHHHS  ------  HHHH ------  HHHHHTTTEEEE  SS HHHHHHHHHHHHHHTTTT SGGGSSS     HHHHHHHHHHTTT  H:    
ExpBur          :ebbebbbbbbeebee------eeeeebe------eeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
6zgf_B_1     941:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1040
SecStr          :HHHHHSHHHHHHHHHHHHHHHHHHHHS GGGS TTTHHHHHHHHHHHHHHHGGG  SSSS S TTTTTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebbeebeeeeeebeebbebbeebeebbeebbeebeeeeebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
6zgf_B_1    1041:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1140
SecStr          :HHHHHHHHHHHHHHHHHHHTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE SEEEEEEES EESSS EEEESSSEEEESSS EEEEETTEEEEE:    
ExpBur          :ebeebbeebeebbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPE:1144
                :*********** *******************:
6zgf_B_1    1141:IITTDNTFVSGSCDVVIGIVNNTVYDPLQPE:1171
SecStr          :E BTTSEEE S TTTSTT EE   B TTS  :    
ExpBur          :ebbeebbeeeeeeeeeeeeeeeebeeeeeee:    
Contact         :                    b                                                                               


Input Residue Numbers for Focused Sites

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