#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6zb5_C_1_W_1

Protein Model on 6zb5_C_1_W_1 (TEMPLATE: 6zb5 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) C 1 (A) polymer(polypeptide(L)) [1032 aa] Spike glycoprotein :SPIKE_SARS2
2 b W 1 (B) non-polymer(EIC) LINOLEIC ACID 415T 416G (identity: 100.0 %/91.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6zb5_C_1 identity=91.7%
queryA        15:CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
                :****      *******************************************         **************************************:
6zb5_C_1      15:CVNLXXXXXXPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAXXXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKT: 114
SecStr          :    ------   EEEE S  EE   S    SEEEEEEEEE  TTEEEEEE  ---------       EE SS EEEEEE SS  EEEEEEESS STTS:    
ExpBur          :eeee------eeeeeebeebbbbbeeeeeeeeeeeebeebbbbbeeebeebeb---------eeeebeebebeebbbbbbebeeebbebbbbbeebeeee:    

queryA       115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVR: 214
                :*****************************            *****************              ************************    :
6zb5_C_1     115:QSLLIVNNATNVVIKVCEFQFCNDPFLGVXXXXXXXXXXXXEFRVYSSANNCTFEYVSXXXXXXXXXXXXXXKNLREFVFKNIDGYFKIYSKHTPIXXXX: 214
SecStr          : BEEEEE SS EE   B EEEEEEEEEE ------------  EEEEEE         --------------    EEEEEEETTEEEEEEE    ----:    
ExpBur          :ebbbbbeeeeeebbebbebebbeebbbbe------------eeebeeeeeeeeeeeee--------------eebebbbbbeeeeebebbeeebee----:    

queryA       215:DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
                : *******************************          **********************************************************:
6zb5_C_1     215:XLPQGFSALEPLVDLPIGINITRFQTLLALHRXXXXXXXXXXGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQ: 314
SecStr          :-   S  EEEEEEEEE      EEEEEEEEB ----------  B    EEEE   EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S   SEEEE:    
ExpBur          :-eeeeeebbeeeeebebebebeebbbbbbbee----------eeebeebbbbbbebeebebbbebeeebebeebbbbeeebbbebbbeeeeeebeebeee:    

queryA       315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
                :****************************************************************************************************:
6zb5_C_1     315:TSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ: 414
SecStr          :E        EEEEE      B  HHHHHS S   BGGG EEEEE S B  GGGGTTT   SEEEESSS GGGTTS EESSEEEEEEEEEGGGGGG SSS :    
ExpBur          :beebeeeeeeebbbbeeeeeebebeebbeeeebbbbeebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbeee:    

queryA       415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
                :****************************************************************************************************:
6zb5_C_1     415:TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLS: 514
SecStr          : SHHHHHT    SS  EEEEEEE TTTS  TT     EEE   SS   TT        EE SSS   S  SSSEE SEEE    TTS TTSSEEEEEEEE:    
ExpBur          :eeebbbebbebbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeeeeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbeb:    
Contact         :bb                                                                                                  

queryA       515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
                :****************************************************************************************************:
6zb5_C_1     515:FELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD: 614
SecStr          :  BSSS   EE S        SS EEEEETTEEEEEEEEE      TT  EEE TTS EEEEE TTT  EEEEE S    EEEEE  TTT    EEEETT:    
ExpBur          :bebeeeebebbbeeeeeeebeeebbebbbbbeeeebebeeeeeebeeeebbbeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbee:    

queryA       615:VNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI: 714
                :****             ********************************************              *************************:
6zb5_C_1     615:VNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQXXXXXXXXXXXXXXQSIIAYTMSLGAENSVAYSNNSIAI: 714
SecStr          :    -------------  S S   S B   SS EEES EE S     SEEEETTEEEEE --------------  EEEEE            SSEEEE:    
ExpBur          :bebe-------------eeebeeeeeeeeebeebbbbebeebeeeeeeebebeeebbbeee--------------eebbbbeeeeeeeeeeeeeeeeeeb:    

queryA       715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814
                :****************************************************************************************************:
6zb5_C_1     715:PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSK: 814
SecStr          :ES EEEEEEEEEEE     EEE HHHHHTTT HHHHHHTTTT HHHHHHHHHHHHHHHHHHHHHHHHH S        S    SS   TTTS  TTSSS :    
ExpBur          :beebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeeeeeeeeeebebeebbeeeebebe:    

queryA       815:RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
                :**************   ************    *******************************************************************:
6zb5_C_1     815:RSFIEDLLFNKVTLXXXGFIKQYGDCLGDXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQN: 914
SecStr          :  HHHHHHHTTS  ---     HHHHS  ---- HHHHHHTTTEEE   SS HHHHHHHHHHHHHHHHHHSSSTTSSS     HHHHHHHHHHTTT  HH:    
ExpBur          :bbebbebbeeebee---eeeeeeeebeee----eeebebeeebbeeeeeebeeeebbebbebbbbbbbebbeebeeeeeeeeebbebbbebbeebebeee:    

queryA       915:VLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
                :**************************   ***********************************************************************:
6zb5_C_1     915:VLYENQKLIANQFNSAIGKIQDSLSSXXXALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIR:1014
SecStr          :HHHHSHHHHHHHHHHHHHHHHHHHT ---   HHHHHHHHHHHHHHHHHHGGG  SSSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeeeeeebbeebeebbeebbeebee---ebeebbebbeebeebbbebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeee:    

queryA      1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
                :****************************************************************************************************:
6zb5_C_1    1015:AAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQI:1114
SecStr          :HHHHHHHHHHHHHHHHHHTSS   STTSSSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EESSS EEE SSSEEEESSS EEEEETTEEEEEE:    
ExpBur          :beebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebebbbeeeebebbbeebeeeee:    

queryA      1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139
                :*************************:
6zb5_C_1    1115:ITTDNTFVSGNCDVVIGIVNNTVYD:1139
SecStr          : BSSS EE S TTS TT EE   B :    
ExpBur          :beeeebeeeeeeeeeeeeeeeebee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123