#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [1058 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | J 1 (J) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 331N 580Q (identity: 100.0 %/94.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xm4_B_1 identity=94.2% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xm4_B_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEESS B SS S EEEEEEEE TTEEEEE ---------- EE SS EEEEEEESSS EEE SS SSSS EEEE SS E: ExpBur :eebebebbbbbbeeeeeeeeeeeebeeebbbbeeebeeeeeee----------ebeebebeebbbbbbbbeeeebbbbbbbbeeeeeeebbbbbeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ************** *****************************************: 6xm4_B_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE S SS --------------- SS EEE ------------- EEEEEEEE TT EEEEEEEE SSS SS BEEE: ExpBur :bbbbbbbebeeebebee---------------eeeeeeeeeeeeee-------------eeebebbbbbbeeeebebbeeeeebeeeebbeeeebbbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************* **************************************************************: 6xm4_B_1 214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXXYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EE EEEEE SS ------------- EEEE EEEEEEEEEETTTEEEEEEESSSSHHHHHHHHTTSS SEEEEEEEE B : ExpBur :eebebebebeebbbbbeeeeeeeee-------------bbbbebeebebbbebeeebebeebbbeebebbbbbebeeebeebeeeebebeebebeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xm4_B_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B SB TTTTT S SSS EEEEE S B HHHHTS S BTTS SSSTTS BSEEEEEEE BTTTTSS SSS HHHHHT : ExpBur :ebbeeeeeebeeeebbeeeebbbbeebeeeebeebebebeebeeeeeeeeeebeebeeeebeeeebbbbebbbbbbebebeebbbeeeeeebbeebbbbe: Contact : b queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6xm4_B_1 414:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SS SEEEEEE HHHH TTTB EEE SS SS S B SSSS TTSS TT B EEE B SSS TTT BEEEEEEEEE SS BB : ExpBur :eebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebebeeeeeeeeebebbbbbebeeeeeeeebeb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6xm4_B_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr : SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEE TTT S EEEETT TTSHHHHTTG: ExpBur :beeeeeebeeebbebebeeeeeebebeebeeeeeeeeeeeeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbeeebeebbbbbeebebeebeebbeb: Contact : b queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6xm4_B_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :GGS TTTGGGTS S EEEETTEEEESSEE S SEEEETTEEEEEE ------------ EEEEEE SSEEEEEEEEEEEEEEEE: ExpBur :eeeeeebeebbeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xm4_B_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHHTT TTTHHHHTTS SHHHHHHHHHHHHHHHHHHHHHHHH S SS STT TTTS SSSSSS HHHHHHTTSS: ExpBur :bbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeeebbebbebbbebb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :****************************************************************************************************: 6xm4_B_1 814:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : TT HHHHHHHT TTS S TTSSSTTEEEE SS HHHHHHHHHHHHHHHHHHTTSTTTSS HHHHHHHHHHTTT THHHHHTHHHHHHH: ExpBur :eeeebebbeebeeeeeeeeeeeeebeeebebbbeeeeebeeeebbebbebbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xm4_B_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHTSS HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebbeebeeeeeebeebbebbeebbebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebbebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xm4_B_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSSSEEEE SSS EE BTTSEEEEEET: ExpBur :ebbeebbbebbeeeebbeeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebbbeeebbeeebeeeeee: queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6xm4_B_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :TSSTT EE B TT SS : ExpBur :eeeeeeeeeebeeeeeeeeee: |