#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [1038 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 108T 234N 236T (identity: 100.0 %/92.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xm3_A_1 identity=92.4% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xm3_A_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EE TT EE SS S EEEEEEEE TT EE B ---------- EE S EEEEEEESS EEEEEEESS BSSS EEEEEE SS E: ExpBur :eebebbebbbbeeeeeeeeeeeeebeebbbbbeeebeebebee----------eeeebebeebbbbbbbbeeeebbbbbbbbebeeeeebbbbbeeeeee: Contact : b queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** *************** *****************************************: 6xm3_A_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXXXXXXVYSSANNCTFEYVSQXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE B SS EE --------------- SS EEEE ------------ EEEEEEEEEETTEEEEEEEEEE SSS SS EEEEE: ExpBur :ebbbbebebeeebbbee---------------eeeeeeeeeeeeeee------------eeebebbbbbeeeeebebbeeeeebeeeeebeeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************ ***************************************************************: 6xm3_A_1 214:VDLPIGINITRFQTLLALHRSYLTXXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEE EEEEEEEESS ------------- EEEEE EEEEEEEEE TTS EEE BTTSSHHHHHHHHHT S SEEEEE EE : ExpBur :eebebebebeebbbbbbeeeeeee-------------ebbbbebeebebbbebbeebebeebbbbbbebbbbbbbeeeebebeeeeeebeeebeeeeeeb: Contact : b b queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xm3_A_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B STTTSS S TTS EEEEE SEE SHHHHTSTT SEEEESSS GGGGGG B S EEEEEEEE SGGGGGSSSS SSHHHHT : ExpBur :bbbeebeeebebeebbeeeebebbebbeeeebeebbbebeebeeeeeeeeeebeebeeeebbeebbbebebbbbbbbbebeebbbeeeeeebbbebbbbb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************** ********************************************************************************: 6xm3_A_1 414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :SS EEEEEEE HHHH -- EE SS TT EE SS SS TTEE S EE TTS TTSS EEEEEEEE SSS EE : ExpBur :eebbbbbbbbebbeebbe--ebeebebbbeeeeebeeeeeeeeeebeeeeeeebeeeeeeebeebbebbebeeeeeeeebbbbbbbbbbeeeeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6xm3_A_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr :S SSEEEEEETTEEEEEEEEE SS SEEE TTS EEEEE TTT EEEEE EEEEE TTT EEEEET TTTSHHHHTTG: ExpBur :eeeeeeeeeeebbebbbeebeeebbbeeeeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6xm3_A_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :GGS TTTGGGGSSS EEE SSEEEES EE S SEEEETTEEEEEE ------------ EEEEEE S TTEEEEEEEEEEEEEEEE: ExpBur :eebeeebeeebeeeeebebeebbbbebeeeeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xm3_A_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHSTT HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS S STT TTTS SSSSS TTHHHHHHH : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbbebeeeeeeeeeeebeebebeebbeeeeeeeebbebbebbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** *******************************************************************************: 6xm3_A_1 814:TLXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : ------------------- HHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHGGGT THHHHHTHHHHHHH: ExpBur :ee-------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xm3_A_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHTTTTHHHHSS HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbebbeebeebbeebeeebeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebbeebeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xm3_A_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE SSS B BSSSEEEEEET: ExpBur :ebbeebbbbbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebeeeeebbeebbeeeeeb: queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6xm3_A_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :TSSTT EE B TTSSTT : ExpBur :eeeeeeeeeebeeeeeeeeee: |