#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 6xlu_C_1_JA_1

Protein Model on 6xlu_C_1_JA_1 (TEMPLATE: 6xlu )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) C 1 (C) polymer(polypeptide(L)) [1060 aa] Spike glycoprotein :SPIKE_SARS2
2 b JA 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 835K (identity: 100.0 %/94.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6xlu_C_1 identity=94.4%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*******************************************          ***********************************************:
6xlu_C_1      14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113
SecStr          : EEE SS  EE  SS    S EEEEEEEE  TT EEEEE    ----------    EE SS EEEEE  SSS EEEEEEESS SSSS EEEEEE SS E:    
ExpBur          :eebebeebbbbeeeeeeebeeeeebeebbbbbeeebeebeeee----------eeeebebeebbbbbbbeeeeebbbbbbbeebeeeeebbbbbeeeeee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :*****************          *******************             *****************************************:
6xlu_C_1     114:VIKVCEFQFCNDPFLGVXXXXXXXXXXESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213
SecStr          :EEE       SS  EE ----------  EE S S   S   EEE -------------   EEEEEEE  TT EEEEEEEE   SSSS   S  EEEEE:    
ExpBur          :ebbbbbbebeeebbbbe----------eeeeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebebbbeebebeeeeebbeeeebbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*************************            ***************************************************************:
6xlu_C_1     214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313
SecStr          :EEE       EEEEEEEESS     ------------ EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS   SEEEEEEEEE    SB :    
ExpBur          :eebebebebeebbbbbeeeeeeeee------------bbbbbebeeeebbbebeeebebeebbbbebebbbbbbbeeeeeebeeeebebeebebeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
6xlu_C_1     314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413
SecStr          : B      B   HHHHS S   BSSS EEEEE SBB   HHHHTSSS SEEEESSS GGGGGG EEEEEEEEEEEE TT GGGSSSS  SHHHHHT    :    
ExpBur          :bbbeeeeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebbebbbbebebbbbbbebebbebbbeeeeeebbeebbbbb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :******************  ********************************************************************************:
6xlu_C_1     414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513
SecStr          :TT  EEEEEEE HHHH  -- B    EE   SS   TT        EE SSS   SS BTTEE SEE   B TT  TTTS EEEEEEEEEESSS   EE :    
ExpBur          :eebebbbbbbebbeebbe--ebeebebbeebeeebeeeeeeeeeebeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbbbbebeeeebebbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :****************************************************************************************************:
6xlu_C_1     514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613
SecStr          :         SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE SSS  EEEEE   EEEEEEEE  TTT    EEEEET  GGGHHHHTTT:    
ExpBur          :eeeeeeebeeebbebbbbbeeeebebeebeeebeeeebeeeeeeeeeebbbbbeeeebbebeebeebebbbbbbbbeebeebbbbbeebebeebeebbbe:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :**************************************************            **************************************:
6xlu_C_1     614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713
SecStr          :TTS HHHHTTSSSS EEEETTEEEES EEEEEEE  SEEEETTEEEEEE ------------  EEEEEEE           SSEEEEES EEEEEEEEE:    
ExpBur          :eebeeebeeebeeeeebebeebbbbebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
6xlu_C_1     714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813
SecStr          :EE    EEEE HHHHHHTT HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH S  S      SS STT   TTTS  SSSSS   HHHHHHHTS :    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeeeeeeeeeebbebebeebbbeeeeeebebebbebbbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**  ************************************************************************************************:
6xlu_C_1     814:TLXXAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913
SecStr          :  --  SSGGGS   SSSSTTSHHHHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHHTTSTTTSS     HHHHHHHHHHHTT  HHHHHHTHHHHHHH:    
ExpBur          :ee--ebeeeebeebeeeeebeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    
Contact         :        b                                                                                           

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :***********************************************************  ***************************************:
6xlu_C_1     914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013
SecStr          :HHHHHHHHHHHHHS S TTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeeebeeeeeebeebbebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
6xlu_C_1    1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113
SecStr          :HHHHHHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEE  EEEEEEES EESSS EEEESSSEEEESSS EEEE SSS   B  BSSSEEE S G:    
ExpBur          :ebbeebbbbbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebbeeeebbeeebeeeeeb:    

queryA      1127:DVVIGIVNNTVYDPLQPELDS:1147
                :*********************:
6xlu_C_1    1114:DVVIGIVNNTVYDPLQPELDS:1134
SecStr          :GGSTT EE   B SSGGG   :    
ExpBur          :eebeeeeeeebeeeeeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123