#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | C 1 (C) | polymer(polypeptide(L)) [1060 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | JA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 835K (identity: 100.0 %/94.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6xlu_C_1 identity=94.4% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6xlu_C_1 14:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 113 SecStr : EEE SS EE SS S EEEEEEEE TT EEEEE ---------- EE SS EEEEE SSS EEEEEEESS SSSS EEEEEE SS E: ExpBur :eebebeebbbbeeeeeeebeeeeebeebbbbbeeebeebeeee----------eeeebebeebbbbbbbeeeeebbbbbbbeebeeeeebbbbbeeeeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ******************* *****************************************: 6xlu_C_1 114:VIKVCEFQFCNDPFLGVXXXXXXXXXXESEFRVYSSANNCTFEYVSXXXXXXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 213 SecStr :EEE SS EE ---------- EE S S S EEE ------------- EEEEEEE TT EEEEEEEE SSSS S EEEEE: ExpBur :ebbbbbbebeeebbbbe----------eeeeebeeeeeeeeeeeee-------------eeebebbbbbeeeeebebbbeebebeeeeebbeeeebbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :************************* ***************************************************************: 6xlu_C_1 214:VDLPIGINITRFQTLLALHRSYLTPXXXXXXXXXXXXAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 313 SecStr :EEE EEEEEEEESS ------------ EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS SEEEEEEEEE SB : ExpBur :eebebebebeebbbbbeeeeeeeee------------bbbbbebeeeebbbebeeebebeebbbbebebbbbbbbeeeeeebeeeebebeebebeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :****************************************************************************************************: 6xlu_C_1 314:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 413 SecStr : B B HHHHS S BSSS EEEEE SBB HHHHTSSS SEEEESSS GGGGGG EEEEEEEEEEEE TT GGGSSSS SHHHHHT : ExpBur :bbbeeeeeebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebbebbbbebebbbbbbebebbebbbeeeeeebbeebbbbb: queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************** ********************************************************************************: 6xlu_C_1 414:DDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 513 SecStr :TT EEEEEEE HHHH -- B EE SS TT EE SSS SS BTTEE SEE B TT TTTS EEEEEEEEEESSS EE : ExpBur :eebebbbbbbebbeebbe--ebeebebbeebeeebeeeeeeeeeebeeeeeeeeeeeeeeebeebbeebebeeeeeebebbbbbbbbbbebeeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :****************************************************************************************************: 6xlu_C_1 514:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 613 SecStr : SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEET GGGHHHHTTT: ExpBur :eeeeeeebeeebbebbbbbeeeebebeebeeebeeeebeeeeeeeeeebbbbbeeeebbebeebeebebbbbbbbbeebeebbbbbeebebeebeebbbe: queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 :************************************************** **************************************: 6xlu_C_1 614:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :TTS HHHHTTSSSS EEEETTEEEES EEEEEEE SEEEETTEEEEEE ------------ EEEEEEE SSEEEEES EEEEEEEEE: ExpBur :eebeeebeeebeeeeebebeebbbbebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6xlu_C_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHHTT HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH S S SS STT TTTS SSSSS HHHHHHHTS : ExpBur :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeeeeeeeeeebbebebeebbbeeeeeebebebbebbbeeb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :** ************************************************************************************************: 6xlu_C_1 814:TLXXAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : -- SSGGGS SSSSTTSHHHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHHTTSTTTSS HHHHHHHHHHHTT HHHHHHTHHHHHHH: ExpBur :ee--ebeeeebeebeeeeebeeebbebeeebbebeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee: Contact : b queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :*********************************************************** ***************************************: 6xlu_C_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHS S TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeeebeeeeeebeebbebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6xlu_C_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSS EEEESSSEEEESSS EEEE SSS B BSSSEEE S G: ExpBur :ebbeebbbbbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbbeeeebbbbbeebbeeeebbeeebeeeeeb: queryA 1127:DVVIGIVNNTVYDPLQPELDS:1147 :*********************: 6xlu_C_1 1114:DVVIGIVNNTVYDPLQPELDS:1134 SecStr :GGSTT EE B SSGGG : ExpBur :eebeeeeeeebeeeeeeeeee: |