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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(IMA1_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [322 aa] | YIIIM''6AII | |
2 | b | H 1 (H) | polymer(polypeptide(L)) [104 aa] | Capsid decoration protein,pD_(KR)5 :DECO_LAMBD | 148A 149S 155T(I) 184W 188N 191G(S) 228N(E) 231W 235N 238R(S) 270D(E) 273W 276S(G) 277Y(N) 280D(S) 281G 311T(Q) 315R(W) 322T(S) 354E 357W 361N 434T(E) (identity: 47.8 %/39.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5mfd_G_1 identity=39.4% |
queryA 121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220 : * * * * * * **** ** ** * ** ** ** ** * * * ***** * ** ** * ** * : 5mfd_G_1 6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103 SecStr :HHHHHHGGG S HHHHH-HHHHHHHHHTTSHHHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HH-: ExpBur :eeebbeebebeeeeebb-ebbeebbeebeeeeeebeebbeeebbebbbebbeeeeeebbbbbbebbbbbbebbeebbebbbeeebbebbbebbeeeeee-: Contact : bb b b b b queryA 221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318 : * *** * * *** ** ** ** * * * ** * * * * ** ** * ** *: 5mfd_G_1 104:----ILQEALWTLGNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLG: 197 SecStr :----HHHHHHHHHHHHTTS HHHHHHHHHTT-- HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHH: ExpBur :----bbbbbbebbbbbbebbeebbeebbeee--bbeebbebbeeeeeebbebbbebbbbbbebeeebbebbbeeebbeebbebbeeeeeebbebbbebbb: Contact : b b b b b b bb bb b b queryA 319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH: 418 :** * ** * ******* ** * * ** ** ** * *** * * * ** ** ** * * *** ** : 5mfd_G_1 198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGN-EQKQAVKE: 296 SecStr :HHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG HHHHHHHHHHHHHHHTS H-HHHHHHHH: ExpBur :bbbeeeeebbbbbbeeebbeebbebbeeeeeebbebbbebbbbbbebeeebbbbbbeeebbebbbebbebeeeebbebbbebbbbbbebee-ebeebbee: Contact : b b b b queryA 419:CGIIEPLMNLLTAKDTKI: 436 : * * * * **: 5mfd_G_1 297:AGALEKLEQLQSHENEKI: 314 SecStr :TTHHHHHHHGGG S HHH: ExpBur :eebeeebeebeeeeeeeb: Contact : b |