[pdbjlvh2]Protein Model on 5mfk_A

Protein Model on 5mfk_A_1 (TEMPLATE: 5mfk )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(IMA1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [239 aa]	YIII(Dq.V1)4CPAF

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5mfk_A_1 identity=35.6%

queryA       253:LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQ: 352
                :**  *  *   *   *       *    * ** *      *    *****          *  ** **  *  ** *  * ****     **        :
5mfk_A_1       6:LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQKLIEAGALSPLVKLLDDASEEVIKEAVWAIANIASGNNEQIQKLIEAGALSPLVKLLDDASEEVI: 105
SecStr          :HHHHHHGGG S HHHHHHHHHHHHHHHTS HHHHHHHHHTT HHHHHHTTS S HHHHHHHHHHHHHHTTS HHHHHHHHHTT HHHHHHGGG S HHHH:    
ExpBur          :beebbebbebeeeeebeebbeebbebbeeeeeebeebbeeebbeebbebbeeebeebbebbbebbbbbbebeeebbeebbebebbebbbebbeeeeeebb:    

queryA       353:KEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAE: 452
                :*** *   **  *   ***     *    **  *  *     ******  *  **   ***  *   *   **  **       *     ** **     :
5mfk_A_1     106:KEAVWAIANIASGNNEQIQKLIEAGALSPLVKLLDDASEEVIKEAVWAIANIASGNN-EQIQKLIEAGALSPLVKLLDDASEEVIKEAVWAIANIASGNN: 204
SecStr          :HHHHHHHHHHTTS HHHHHHHHHTT HHHHHHTTSSS HHHHHHHHHHHHHHHTS H-HHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHHSS H:    
ExpBur          :bbbbebbbbbbebeeebbeebbeeebbebbbebbeeebeebbeebbebbbbbbebee-ebbeebbeeebbebbbebbeeebeebbbbbbebbbbbbeeee:    

queryA       453:KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKY: 495
                :            ** * *   * ** * ** * *      *  :
5mfk_A_1     205:EMKQK------LEEAGALPALEKLQSHANEEVQKNAQAALEAF: 241
SecStr          :HHHHH------HHHHTHHHHHHHGGG S HHHHHHHHHHHHHH:    
ExpBur          :ebbee------beeeebbebbeebeeeebeebeeebeebbeeb:

Protein Model on 5mfk_A_1 (TEMPLATE: 5mfk )

Input Residue Numbers for Focused Sites