[pdbjlvh2]Protein Model on 5mff_A_1_B

Protein Model on 5mff_A_1_B_1 (TEMPLATE: 5mff )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IMA1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [280 aa]	YIIIM5AII
2	b		B 1 (B)	polymer(polypeptide(L)) [280 aa]	YIIIM5AII	149S 150G 151T(G) 152S(N) 191G(S) 192D(G) 193G 194S(N) 239N 242P(I) 265P(E) 266E(Q) 280D(S) 282P(G) 307L(E) 308P(Q) 349T(E) 350N(Q) 390D(N) 391F(E) 392K 395K (identity: 27.3 %/40.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5mff_A_1 identity=40.5%

queryA       121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220
                : *  *  *   *    *      *  ****  **  ** * ** **   ** **   *   * *** ***  *      **  **   *  **  *    :
5mff_A_1       6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103
SecStr          :HHHHHHHTT S HHHHH-HHHHHHHHHHTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HH-:    
ExpBur          :eeebbebbebeeeeebb-ebbeebbebbeeeeeebeebbeeebbebbbebbebebeebbbebbebbbbbbebbeebbbbbbeeebbebbbebbebeeee-:    
Contact         :                            bbbb                                      bbbb                          

queryA       221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318
                :     *    * ***     *      ***    ** ** **       *    ** *    * ** *  *   *  * ** **      *   ** *  :
5mff_A_1     104:----ILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS: 197
SecStr          :----HHHHHHHHHHHHTTS HHHHHHHHHTT--HHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHH:    
ExpBur          :----bbebbbebbbbbbebeeebbbbbbeee--bbebbbebbebebeebbebbbebbbbbbebeeebbbbbbeeebbebbbebbebeeeebbbbbbebbb:    
Contact         :                  b b  b                      bb             b b                        bb          

queryA       319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEA: 397
                :**  *  ** * *******     **  *   *  ** *  ***  *   * * *   *    *    *    * ****:
5mff_A_1     198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA: 276
SecStr          :HHTTS HHHHHHHHHTTHHHHHHHHTT S HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHHTT SSHHHHHHH:    
ExpBur          :bbbebeeebbbbbbeeebbebbbebbebeeeebbebbbebbbbbbebeeebbebbeeeebeeebeebeeeeeeebeebb:    
Contact         :                              bb                                       bbb  b

Protein Model on 5mff_A_1_B_1 (TEMPLATE: 5mff )

Input Residue Numbers for Focused Sites