Protein Model on 5mfd_A_1_B_1
(TEMPLATE: 
5mfd
)Protein Model on 5mfd_A_1_B_1
(TEMPLATE: 5mfd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(IMA1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [323 aa] | YIIIM''6AII | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [105 aa] | Capsid decoration protein,pD_(KR)5 :DECO_LAMBD | 145T(S) 146N(Q) 148A 149S 151T(G) 152S(N) 155T(I) 184W 188N 191G(S) 192D(G) 197R(I) 231W 235N 238R(S) 242P(I) 270D(E) 273W 276S(G) 277Y(N) 280D(S) 312P(E) 315R(W) 319N 354E 357W 364A(S) 395K(Q) (identity: 35.7 %/39.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5mfd_A_1 identity=39.4% |
queryA 121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220
: * * * * * * **** ** ** * ** ** ** ** * * * ***** * ** ** * ** * :
5mfd_A_1 6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103
SecStr :HHHHHHTTS S HHHHH-HHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HH-:
ExpBur :eeebbebbebeeeeebb-ebbeebeebbeeeeeebeebbeeebbeebbebbeeeeeebbebbbebbbbbbebbeebbebbbeeebbebbbebbeeeeee-:
Contact : bb bb bb b b b bb b
queryA 221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318
: * *** * * *** ** ** ** * * * ** * * * * ** ** * ** *:
5mfd_A_1 104:----ILQEALWTLGNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLG: 197
SecStr :----HHHHHHHHHHHHTTS HHHHHHHHHTT--HHHHHHHHTT S HHHHHHHHHHHHHHTTS HHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHH:
ExpBur :----bbebbbebbbbbbebbeebbebbbeee--bbeebbebbeeeeeebbeebbebbbbbbebbeebbeebbeeebbeebbebbeeeeeebbbbbbebbb:
Contact : b b bb b b b bb b b b
queryA 319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH: 418
:** * ** * ******* ** * * ** ** ** * *** * * * ** ** ** * * *** ** :
5mfd_A_1 198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGN-EQKQAVKE: 296
SecStr :HHTTS HHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS H-HHHHHHHH:
ExpBur :bbbeebeebbebbbeeebbeebbebbeeeeeebbebbbebbbbbbebbeebbbbbbeeebbebbbebbebeeeebbebbbebbbbbbebee-ebbeebee:
Contact :b b b b b
queryA 419:CGIIEPLMNLLTAKDTKI: 436
: * * * * **:
5mfd_A_1 297:AGALEKLEQLQSHENEKI: 314
SecStr :TTHHHHHHHGGG SSHHH:
ExpBur :eebeeebeebeeeeeeeb:
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[assembly_id:1]
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