Protein Model on 4v3q_D_1 (TEMPLATE: 4v3q )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description
1 a A(IMA1_HUMAN) D 1 (D) polymer(polypeptide(L)) [244 aa] YIII_M4_AII
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4v3q_D_1 identity=38.3%
queryA       253:LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQ: 352
                :**  *  *   *   *       *    *  * *  *   *  * ** **      *   **   ***  * *** * *******     **  *   * :
4v3q_D_1      10:LPQMVQQLNSPDQQELQSALRKLSQIASGGDEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGDEQIQAVIDAGALPALVQLLSSPNEQIL: 109
SecStr          :HHHHHHGGG S HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHHTT S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHHTT S HHHH:    
ExpBur          :beebbeebebeeeeebbebbeebbebbeeeeeebeebbeeebbebbbebbeeeeeebbeebbebbbbbbebbeebbbebbeeebbeebbebbeeeeeebb:    

queryA       353:KEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAE: 452
                : ** **  **  *   *** *   *  * **  **        ** *   *  ***  ***      *    *  **      *    *    **     :
4v3q_D_1     110:QEALWTLGNIASGGDEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGD-EQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASG--: 206
SecStr          :HHHHHHHHHHTTS HHHHHHHHHTT HHHHHHHHT S HHHHHHHHHHHHHHTTS H-HHHHHHHHTTHHHHHHHHTT S HHHHHHHHHHHHHHHTS--:    
ExpBur          :ebbbebbbbbbebeeebbebbbeeebbeebbebbeeeeeebbebbbebbbbbbebee-ebbbbbbeeebbebbbebbebeeeebbbbbbebbbbbbeb--:    

queryA       453:KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEK: 494
                :  *   *      * * * * * ** ****   *      **:
4v3q_D_1     207:--GNEQKQA--VKEAGALEKLEQLQSHENEKIQKEAQEALEK: 244
SecStr          :-- HHHHHH--HHHTTHHHHHHHHTT SSHHHHHHHHHHHH :    
ExpBur          :--eeebeeb--beeeebeebbeebeeeeeeebeebbeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123