[pdbjlvh2]Protein Model on 5pb6_B_1_J

Protein Model on 5pb6_B_1_J_1 (TEMPLATE: 5pb6 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	B 1 (C)	polymer(polypeptide(L)) [249 aa]	Coagulation factor VII heavy chain :FA7_HUMAN
2	b		J 1 (C)	non-polymer(9RV)	N-({3-[5-hydroxy-4-(1H-pyrrolo[3,2-c]pyridin-2-yl)-1H-pyrazol-1-yl]phenyl}methyl)pentanamide	280V(L) 281C 296H 297C 299E(D) 300K 436S 437C 438Q(K) 441S 460S 461W 462G 464G (identity: 78.6 %/39.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5pb6_B_1 identity=39.2%

queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAG----YQVEKVISHPNYDSKTKNNDIALMKL: 351
                :****     *  **** * *     ***  *   * * ****  *  *    *      *         *      *  **    *   * * ****  *:
5pb6_B_1       1:IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKN----WRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRL:  96
SecStr          : BS EE  TTSSTTEEEEEETTEEEEEEEESSSSEEEE GGGGTT S ----GGGEEEEES  BTT   S  EEEEEEEEEEETT  TTS TT  EEEEE:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeeeebbbbbbeeebbbbbbbbbeebee----eeebebbbbbbbeeeeeeebbebebebbbbbeebeeeebebbbbbbbb:    
Contact         :                        bb              bb bb                                                       

queryA       352:QKPLTFNDLVKPVCLPNPGM---MLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRC--NSRYVYDNL-ITPAMICAGFLQGNVDSCQGDSGGPL: 445
                :  *    * * * ***        *        ****     * *   *    *    ** *   **       **  * ***   *  *** ****** :
5pb6_B_1      97:HQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRXXXXSPNITEYMFCAGYSDGSKDSCKGDSGGPH: 196
SecStr          :SS    BTTB   B   HHHHHHTGGG  EEEEEES BSSTT  B SB EEEEEEEE HHHHHHH  ----     TTEEEES SSSSSB  TT TT EE:    
ExpBur          :eeebeeeeebeebebbeeeebeeebbeeeebebbbbbbeeeeeeebeebbbbebbbbeeeebeeeee----eeeeeebbbbbbeeeeeebbbebbbbbbb:    
Contact         :                                                                                          bbb  b    

queryA       446:VTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                : *     * * *  *** ***     ***  *     *    **  :
5pb6_B_1     197:ATHYRGTWYLTGIVSWGXGCATVGHFGVYTRVSQYIEWLQKLMRSE: 242
SecStr          :EEEETTEEEEEEEE   -  S TT  EEEEEGGGGHHHHHHHHTS :    
ExpBur          :bbeeeeeebbbbbbbee-ebbeebebbbbbebbbbbebbeebeeee:    
Contact         :              bbb b

Protein Model on 5pb6_B_1_J_1 (TEMPLATE: 5pb6 )

Input Residue Numbers for Focused Sites