Protein Model on 5pat_B_1_C_1 (TEMPLATE: 5pat )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) B 1 (B) polymer(polypeptide(L)) [250 aa] Coagulation factor VII heavy chain :FA7_HUMAN
2 b C 1 (B) non-polymer(7ZG) N-(2-amino-1H-benzimidazol-5-yl)-2-(3-chlorophenyl)acetamide 296H 341T 342K(T) 345D 435D 436S 437C 441S 459T(V) 460S 461W 462G 464G 465C (identity: 85.7 %/39.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5pat_B_1 identity=39.2%
queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAG----YQVEKVISHPNYDSKTKNNDIALMKL: 351
                :****     *  **** * *     ***  *   * * ****  *  *    *      *         *      *  **    *   * * ****  *:
5pat_B_1       1:IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKN----WRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRL:  96
SecStr          : BS EE  TTSSTTEEEEEETTEEEEEEEE SSSEEEE GGGGTT S ----GGGEEEEES  BTT   S  EEEEEEEEEEETT  TTS TT  EEEEE:    
ExpBur          :bbeeeebeeeebbbbbbbbbeeeeebbbbbbeeebbbbbbebbeebee----eeebebbbbbbbeeeeeeebbebebebbbbbeebeeeeeebbbbbbbb:    
Contact         :                                        b                                                bb  b      

queryA       352:QKPLTFNDLVKPVCLPNPGM---MLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRC--NSRYVYDNL-ITPAMICAGFLQGNVDSCQGDSGGPL: 445
                :  *    * * * ***        *        ****     * *   *    *    ** *   **       **  * ***   *  *** ****** :
5pat_B_1      97:HQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRXXXXSPNITEYMFCAGYSDGSKDSCKGDSGGPH: 196
SecStr          :SS    BTTB   B   HHHHHHTGGG  EEEEEES BSSTT  B SB EEEEEEEE HHHHHHH  ----     TTEEEES SSSS B  TT TT EE:    
ExpBur          :eeebeeeeebeebebbeeeebeeebbeeeebebbbbbbeeeeeeebeebbbbebbbbebeebeeeee----eeebeebbbbbbeeeeeebbbeebbbbbb:    
Contact         :                                                                                         bbb   b    

queryA       446:VTSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                : *     * * *  *** ***     ***  *     *    **  :
5pat_B_1     197:ATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE: 242
SecStr          :EEEETTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHTS :    
ExpBur          :bbeeeeeebbbbbbbbeeebbeebebbbbbebbbbbebbeebbeee:    
Contact         :             bbbb bb                                                                                


Input Residue Numbers for Focused Sites

ex) 2,15,123