Protein Model on 1l4d_A_1_B_2 (TEMPLATE: 1l4d )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2] [assembly_id:3]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TMPS2_HUMAN) A 1 (A) polymer(polypeptide(L)) [249 aa] PLASMINOGEN :PLMN_HUMAN
2 b B 2 (B) polymer(polypeptide(L)) [112 aa] STREPTOKINASE :STRP_STREQ 275V(T) 278V(M) 279H 296H 297C 299E 300K 317Q(V) 419L(R) 461W 462G 463S(L) 465C 467K(R) 468A(P) 470R(K) (identity: 50.0 %/39.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1l4d_A_1 identity=39.9%
queryA       255:RIVGGESALPGAWPWQVSLHVQ-NVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQK: 353
                :* ***  * *  *******      * ***  * ***  ***** **                           *      *         **** **  :
1l4d_A_1      19:RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT------RKDIALLKLSS: 112
SecStr          :T TT EE  TTSSTTEEEEEETT  EEEEEEEEETTEEEEEGGGGGS SSGGGEEEEES SBSSS  TT EEEEEEEEEE TT------T  EEEEEESS:    
ExpBur          :eeeebbbbeebbbbbbbbbbbeeeebebbbbbbeeebbbbbbebbeebeeeebbebbbbbbeeeeeeeebbebebeeebebee------eeebbbbbbee:    
Contact         :                    b b bb                bb bb                b                                    

queryA       354:PLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNIW: 453
                :*    * * * *** *         * * *** *         *  *    **   **              *** * *  ****** *****       :
1l4d_A_1     113:PAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAG-LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKY: 211
SecStr          :     SS    B   TT    TT EEEEEES S  STTTTT-B EEEEEEEE HHHHTSTTTTTT   TTEEEE  SSS   B  S TT EEEEEETTEE:    
ExpBur          :ebebeeebbbbbebeeeeebeeeeebbbbbbeeeeeeebeb-ebbbbbbebbebebbeeeebbeeebeebbbbbbbeeeebebbbbbbbbbbbbeeeeeb:    
Contact         :                                                                 b                                  

queryA       454:WLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR: 489
                : * * **** ***    ****  *  *  **   **:
1l4d_A_1     212:ILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR: 247
SecStr          :EEEEEE TTT  BBTTB EEEEEGGGGHHHHHHHHH:    
ExpBur          :bbbbbbbeeebebeeeebbbbbbbbebbebbebbee:    
Contact         :       bbb b bb b                                                                                   


Input Residue Numbers for Focused Sites

ex) 2,15,123