Protein Model on 7dtk_A_1_B_1 (TEMPLATE: 7dtk )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) A 1 (B) polymer(polypeptide(L)) [204 aa] ATP-dependent RNA helicase cgh-1 :CGH1_CAEEL
2 b B 1 (A) polymer(polypeptide(L)) [203 aa] ATP-dependent RNA helicase cgh-1 :CGH1_CAEEL 6E(D) 7M(F) 8G(C) 34P(G) 35L(V) 38G(T) 40G(Q) 427T(Y) 428W(E) (identity: 0.0 %/37.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7dtk_A_1 identity=37.7%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*              *  *  *  **  **   * * * *  *  * *****  ****      **  *                               :
7dtk_A_1      35:FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQ-------------------------------: 103
SecStr          :GGGG   HHHHHHHHHTT  S  HHHHHHHHHHHHT  EEEE  SSSHHHHHHHHHHHHT  TTS S  -------------------------------:    
ExpBur          :beebebeeebbebbeeeeeeebeebbeebbeebbeeebbbbebeeeeebbbbbbbbbbeebeeeeebbb-------------------------------:    
Contact         :  bbb                         bb  b b                                                               

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
7dtk_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                  *  *    * **** ** :
7dtk_A_1     101:----------------------------------------------------------------------------------AIQAMVIVPTRELALQTS: 118
SecStr          :----------------------------------------------------------------------------------S  EEEE SSHHHHHHHH:    
ExpBur          :----------------------------------------------------------------------------------bbbbbbbbbeeebbeebb:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :       * *    *      **   **    *   *  *  ****  **   *         ******* ****       *  *  *      *  **:
7dtk_A_1     119:QICVELSKHI---QLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLP------KERQV: 209
SecStr          :HHHHHHTTTT---T  EEEE SSS HHHHHHHHHS  SEEEE HHHHHHHHHTTSS  TT  EEEEESHHHHTSGGGTTHHHHHHTTS ------SS EE:    
ExpBur          :ebbeebbeeb---ebebbebbbeeeeeebeeebeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeebeebbeebbeebe------eeebb:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVD: 430
                :   ***     *     * ** *    :
7dtk_A_1     210:MLYSATFPN-TVTSFMQKHMHKPYEIN: 235
SecStr          :EEEES   H-HHHHHHHHH  S EEE :    
ExpBur          :bbbbbeeee-ebeebbeebbeebeebe:    
Contact         :                       bb                                                                           


Input Residue Numbers for Focused Sites

ex) 2,15,123