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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [426 aa] | Probable ATP-dependent RNA helicase DDX17 :DDX17_HUMAN | |
2 | b | B 1 (C) | polymer(polyribonucleotide) | 18a_oligo1 | 294P 295S(T) 296R 324I(Y) 325G 326G 329A(K) 346T 347P 348G 349R 352D 374G(R) 380Y(F) 383F(Q) 514R(E) 515T 516K 546H 547G 554R 572T 573D 574V 594D(N) (identity: 68.0 %/38.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6uv4_A_1 identity=38.0% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :** ** ** * * * * ****** * * * : 6uv4_A_1 86:PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI---------------------------------------------------------------: 122 SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHH---------------------------------------------------------------: ExpBur :beebbbbbbbbbbbbebbbbbbbbbbebebbbbbbbb---------------------------------------------------------------: queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 6uv4_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIKQFKKY: 312 : * * * **** * * : 6uv4_A_1 123:------------------------------------------------------------VHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKC: 162 SecStr :------------------------------------------------------------HHHHTS TT SEEEE SSHHHHHHHHHHHHHHTTT: ExpBur :------------------------------------------------------------bbbeebeebeeeebbbbbbbbbbebbbbbbbeebeebbee: Contact : bbb queryA 313:IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412 : * * ** * ** ** * ***** * ** ** ******* * * * ** * *** : 6uv4_A_1 163:---SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWPK: 253 SecStr :---S EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHTTS TT EEEEETHHHHTSTTTHHHHHHHHTTS------ TTSEEEEEES H: ExpBur :---bebebbbbbbebeeeebbeebeebbbbbbbbbebbbebbeeeebbbebbbbbbbbbbbebbeeebbeebeebbeeb------eeebbbbbbbbbbbe: Contact : bbb b bbbb b b b b queryA 413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512 : * * * * * * * * * * * ** * ***: 6uv4_A_1 254:-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---VDVCMES-EKDH--------------------------KLIQLMEEIMAEKENK---TIIF: 316 SecStr :-HHHHHHGGG SS EEEEE---S SSS TTEEEE---EEE GG-GHHH--------------------------HHHHHHHHHTTSS ---EEEE: ExpBur :-ebeeebeebbeeebbbbb---beeeebbbeebebe---bbbbeee-ebee--------------------------ebbebbeebbeeeebb---bbbb: queryA 513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM: 612 : ** ** * * * *** ** * * * ** **** ** * * *** * ******* * : 6uv4_A_1 317:VETKRRCDDLTRRMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK: 407 SecStr : SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHHTSS EEEE GGGTSS TT EEEESS SSHHHHHHHHTTSS SS : ExpBur :beeeeebeebbeebeeee---------bebbbbbeeeebeebbebbebbeeeebbbbbbbbbbbbbbebeebebbbbbbbbeebbbbbbbbbbbbbeeee: Contact : bbb bb b bbb b queryA 613:GLAISL: 618 :* * : 6uv4_A_1 408:GTAYTF: 413 SecStr :EEEEEE: ExpBur :bebebb: |