Protein Model on 6qx9_AA_1_A_1 (TEMPLATE: 6qx9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) AA 1 (5X) polymer(polypeptide(L)) [583 aa] Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN
2 b A 1 (1) polymer(polyribonucleotide) U1 snRNA 294P 295S(T) 296R 297E 323I(V) 324I 325G 326G 327V(I) 328A(S) 329A(R) 330R(E) 332Q 346T 348G 349R 352D (identity: 64.7 %/34.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6qx9_AA_1 identity=34.0%
queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :          * *           ** **   **  *   *    ******** ** **                                         :
6qx9_AA_1    390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450
SecStr          : S TTTS   HHHHHHHHHHT  S  HHHHHHHHHHTTT  EEEE  TTSSHHHHHHHHHH---------------------------------------:    
ExpBur          :bbebeebebeeebeebbeeeebeebeebbbbbbbbbebbbbbbbbbeeeeebbbbbbbbbb---------------------------------------:    

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
6qx9_AA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286
                :                                                                                                    :
6qx9_AA_1    451:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 464
SecStr          :--------------------------------------------------------------------------------------HHHHHS HHHH  S:    
ExpBur          :--------------------------------------------------------------------------------------bbbbebeeeeeeee:    

queryA       287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382
                :    * * *  * **** *       * *       *    ***    **   *  *  **  ***** *      * **     ******     *   :
6qx9_AA_1    465:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGXEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 561
SecStr          :S    SEEEE SSHHHHHHHHHHHHHHHGGGT---  EEEE SSS HHHHHHHHHT - EEEE HHHHHHHHHTTSS  TT  EEEESSHHHHHHTT HH:    
ExpBur          :eeeebbbbbbbbeeebbeebeeebeebbeebe---bebbbbbeeeeeeebeeebeee-bbbbbbbebbbebbeeeebebeebbbbbbbbbbebbeeeebe:    
Contact         :           bbbb                         bbbbbbbb b             b bb  b                              

queryA       383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG--: 478
                :         *                 *  *     *     *   *          *  *               ***  *  *          **   :
6qx9_AA_1    562:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLR----------RPAVV: 627
SecStr          :HHHHHHTTS GGGS  SSGGGG HHHHHHHHHTGGG   EEEEEES ---------  HHH---------------HHHHHHH S----------S EEE:    
ExpBur          :ebeebeeebeeebbbeeeeebeeeeebeebbeebeebebbbbbbbee---------eeebb---------------eebbeebbe----------eebbb:    

queryA       479:----ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFL: 569
                :    *  *    *    *  *   *    ** *   *   ***   *  ** *       *              *        *   *   * *    *:
6qx9_AA_1    628:YIGXAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDIL: 718
SecStr          :EE -   HHHHSEEEEEE  GGGHHHHHHHHHHT   S EEEE SSHHHHHHHHHHHHHTT---------  EEE -------- HHHHHHHHHTS  EE:    
ExpBur          :eee-eeebbeebebebeebeeeebeeebeebbeeeeeebbbbbbeeeeebeebbeebeeee---------bebbee--------eeebbeebeeeeeebb:    

queryA       570:ICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630
                :  ***    ***  *  * *         * ***** ***   * **     *   * *  :
6qx9_AA_1    719:VATDVXXXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779
SecStr          :EE   ----      SEEEESS  SSHHHHHHHHGGG SSSS  EEEEEE GGGGGGHHHH:    
ExpBur          :bbbee----eeeeebebbbbbbbbeebeebbebbeebbeeeeebebbbbbbeebeebbeeb:    


Input Residue Numbers for Focused Sites

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