Protein Model on 6qdv_D_1_I_1 (TEMPLATE: 6qdv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(DDX1_HUMAN) D 1 (7) polymer(polypeptide(L)) [390 aa] Eukaryotic initiation factor 4A-III :IF4A3_HUMAN
2 b I 1 (C) polymer(polypeptide(L)) [899 aa] 116 kDa U5 small nuclear ribonucleoprotein component :U5S1_HUMAN 313I(M) 314D(N) 337E(D) 338N(Y) 360N(R) 362S(R) (identity: 0.0 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6qdv_D_1 identity=34.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
6qdv_D_1      18:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  77
SecStr          :SGGGS   HHHHHHHHHHT  S  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbebebbbbbbbbb----------------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
6qdv_D_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
6qdv_D_1      78:-------------------------------------------------------------------------------------CLDIQVRETQALILA:  92
SecStr          :-------------------------------------------------------------------------------------T  TTS S  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebebeeeebbbbbbb:    
Contact         :                                                                                         bbb        

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
6qdv_D_1      93:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 189
SecStr          :SSHHHHHHHHHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  TT  EEEEETHHHHTSTTTHHHHHHHHTTS T:    
ExpBur          :bbebbbebbbebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbeebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee:    
Contact         :                   bb                      bb                     b b                               

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
6qdv_D_1     190:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 248
SecStr          :T ------EEEEEES  - HHHHHHGGGT SS EEE   GGG S TTEEEEEEEE--------SS------------------------THHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-beebbebbeebbeebbebbbeeeebbbeebebbbbeb--------ee------------------------eeeb--bebbb:    

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
6qdv_D_1     249:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 334
SecStr          :HHHGGGTTS-----EEEEE S HHHHHHHHHHH---------HTTT   EEE TTS HHHHHHHHHHHHHTS  EEEE GGGTSS   TTEEEEEESS  :    
ExpBur          :ebbeebeeb-----bbbbbbeeeebbeebbebb---------eeeebebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebebbbbbbbb:    

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
6qdv_D_1     335:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 381
SecStr          :SSHHHHHHHHTTSSGGG  EEEEEEEEGGGHHHHHHH-----HHHHT  EEE:    
ExpBur          :eeebbbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123